Factsheet for Zm00001d016839_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85146	Sorghum	plastid	93.81	85.85
Os02t0562100-00	Rice	plastid	84.54	84.83
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	80.41	82.39
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	80.07	82.04
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	81.1	77.38
GSMUA_Achr9P13630_001	Banana	cytosol	61.51	63.48
HORVU6Hr1G046290.5	Barley	plastid	78.35	60.32
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	50.52	49.0
KRH01614	Soybean	nucleus	47.42	47.92
Solyc07g055170.1.1	Tomato	cytosol	43.99	44.91
PGSC0003DMT400052651	Potato	nucleus	43.64	44.25
AT5G57450.2	Thale cress	nucleus	42.96	41.12
CDY11869	Canola	cytosol	29.21	36.96
Bra006820.1-P	Field mustard	mitochondrion	40.89	35.95
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	29.21	32.82
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	32.99	31.37
Zm00001d050876_P001	Maize	cytosol	6.87	24.1
Zm00001d006656_P001	Maize	cytosol	9.97	23.97
Zm00001d021898_P001	Maize	cytosol	26.46	22.65
Zm00001d041757_P001	Maize	cytosol	26.46	22.65
Zm00001d044278_P001	Maize	cytosol	20.96	20.75
Zm00001d035787_P001	Maize	cytosol	11.68	20.61
Zm00001d010986_P001	Maize	vacuole	24.4	19.83
Zm00001d044629_P001	Maize	nucleus	22.68	17.41
Zm00001d016055_P001	Maize	plastid	12.37	13.09

Protein Annotations

EntrezGene:103627300	MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	UniProt:A0A1D6HAQ9	ProteinID:AQK71789.1	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588
InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PRINTS:PR01874	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000221DF22	EnsemblPlantsGene:Zm00001d016839	EnsemblPlants:Zm00001d016839_P001
EnsemblPlants:Zm00001d016839_T001	SEG:seg	:	:	:	:

Description

X-ray repair complementing defective repair in Chinese hamster3DNA repair protein XRCC3 homolog

Coordinates

chr5:-:178069833..178070708

Molecular Weight (calculated)

31598.4 Da

IEP (calculated)

10.646

GRAVY (calculated)

-0.006

Length

291 amino acids

Sequence
(BLAST)

001: MRPPAPKVPS AASSSSHSQR EPRPENPLLL LPSSRFTKLS LGCPLLDRLL CGGLPAASVT EIAGESASGK TQLCLQLALL APLSPLSASS LFLHSDLPFP
101: LHRLRRLAPK SRPDILDHVL VAAAHSPTDL LSLLARAQRL LANPGRSPHR LPIRLILLDS IASLFRGDFD ASPADLRRRS ALFFQISAKL KELAYRHQCV
201: VVVTNQVVDV VEGDAGNTVA WSSGRRLSPA LGIAWANCVN TRLFLTREVE GNGTSGSARR WMKVAFAPHL PEQSCEFVIR RDGVFGVEPE R

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.