Factsheet for PGSC0003DMT400052651

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g055170.1.1	Tomato	cytosol	94.43	95.09
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	62.72	60.0
GSMUA_Achr9P13630_001	Banana	cytosol	53.31	54.26
KRH01614	Soybean	nucleus	52.61	52.43
AT5G57450.2	Thale cress	nucleus	50.17	47.37
Bra006820.1-P	Field mustard	mitochondrion	54.01	46.83
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	45.99	46.48
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	45.64	46.13
Os02t0562100-00	Rice	plastid	44.6	44.14
Zm00001d016839_P001	Maize	plastid	44.25	43.64
CDY11869	Canola	cytosol	34.49	43.04
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	45.3	42.62
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	43.21	40.52
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	35.54	39.38
OQU85146	Sorghum	plastid	43.21	38.99
HORVU6Hr1G046290.5	Barley	plastid	45.3	34.39
PGSC0003DMT400065314	Potato	cytosol	16.72	21.92
PGSC0003DMT400018063	Potato	nucleus	25.44	20.0
PGSC0003DMT400077570	Potato	nucleus	23.34	19.65
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	1.39	5.8

Protein Annotations

EntrezGene:102604185	MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006950
GO:GO:0007049	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0045003	GO:GO:0051321	InterPro:IPR020588	UniProt:M1BTS1	InterPro:P-loop_NTPase	PFAM:PF08423
EnsemblPlantsGene:PGSC0003DMG400020439	PGSC:PGSC0003DMG400020439	EnsemblPlants:PGSC0003DMT400052651	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0002969A8B	RefSeq:XP_006348882.1	SEG:seg

Description

DNA repair protein XRCC3 homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400020439]

Coordinates

chr7:+:50298793..50299880

Molecular Weight (calculated)

31933.4 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.096

Length

287 amino acids

Sequence
(BLAST)

001: MKPEDLLQRL SPTHTQKCTI GCPVLDRFLG GGIPCNSITE LVAESGCGKT QISLQLLLSA QLPTSLGGLS GSSIYLYSES PFPVRRLHQL SSSFPTLHNP
101: LDQILTHPLH SAHHLFDVLS QLDSLLSSRR DSPSSPPIKL IVIDSIAALF RFEFENNPRD LKQRSGLFFR ISSKLKEQAR RFGLAVVVIN QVVDVMNDSD
201: GLRIGNSTCL YTSERKVCAA LGLSWANCVN TRLFLSRQEE RVAQEVNGDD CFNTQTQRFI RVAFAPHLPD SYCEFVITGE KIFGLER

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.