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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra006820.1-P Field mustard mitochondrion 76.32 70.09
CDY11869 Canola cytosol 48.03 63.48
CDX88622 Canola cytosol, mitochondrion, nucleus, plastid 60.86 60.46
VIT_11s0052g00940.t01 Wine grape cytosol, nucleus, plastid 54.61 55.33
Bra037372.1-P Field mustard extracellular, nucleus, plastid 47.04 55.21
KRH01614 Soybean nucleus 49.01 51.74
GSMUA_Achr9P13630_001 Banana cytosol 47.7 51.42
PGSC0003DMT400052651 Potato nucleus 47.37 50.17
Solyc07g055170.1.1 Tomato cytosol 46.38 49.47
TraesCS6B01G229400.1 Wheat cytosol, nucleus, plastid 41.12 44.01
TraesCS6D01G182800.1 Wheat cytosol, nucleus, plastid 40.79 43.66
Zm00001d016839_P001 Maize plastid 41.12 42.96
Os02t0562100-00 Rice plastid 40.46 42.41
TraesCS6A01G199100.1 Wheat cytosol, nucleus, peroxisome 40.79 40.66
OQU85146 Sorghum plastid 41.45 39.62
HORVU6Hr1G046290.5 Barley plastid 40.13 32.28
AT5G20850.1 Thale cress cytosol 24.67 21.93
AT2G28560.1 Thale cress cytosol, nucleus, plastid 23.68 19.41
AT2G45280.2 Thale cress nucleus, plastid 24.34 19.12
AT3G22880.1 Thale cress nucleus 21.38 18.9
Protein Annotations
MapMan:13.3.6.4.3.2Gene3D:3.40.50.300EntrezGene:835850ProteinID:AAK54457.1EMBL:AB062455EMBL:AB073492
ProteinID:AED96903.1ProteinID:AED96904.1EMBL:AJ438908ArrayExpress:AT5G57450EnsemblPlantsGene:AT5G57450RefSeq:AT5G57450
TAIR:AT5G57450RefSeq:AT5G57450-TAIR-GEnsemblPlants:AT5G57450.2TAIR:AT5G57450.2Unigene:At.26227ProteinID:BAB08781.1
EMBL:BT026072ProteinID:CAD27642.1InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeGO:GO:0000003GO:GO:0000150
GO:GO:0000166GO:GO:0000400GO:GO:0000707GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003690GO:GO:0003697GO:GO:0003824GO:GO:0004518GO:GO:0004520GO:GO:0005488
GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005657GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006302GO:GO:0006310
GO:GO:0006312GO:GO:0006950GO:GO:0006974GO:GO:0007049GO:GO:0007131GO:GO:0008094
GO:GO:0008150GO:GO:0008152GO:GO:0009628GO:GO:0009987GO:GO:0010212GO:GO:0016043
GO:GO:0016787GO:GO:0033063GO:GO:0042148GO:GO:0045003GO:GO:0051321InterPro:IPR020588
RefSeq:NP_200554.1RefSeq:NP_851202.1InterPro:P-loop_NTPasePFAM:PF08423PIRSF:PIRSF005856PO:PO:0000084
PO:PO:0009046PFscan:PS50162PANTHER:PTHR22942PANTHER:PTHR22942:SF24UniProt:Q147M1UniProt:Q9FKM5
InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bdSUPFAM:SSF52540UniParc:UPI00000A1237Symbol:XRCC3SEG:seg
Description
XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
Coordinates
chr5:-:23273067..23274976
Molecular Weight (calculated)
33733.4 Da
IEP (calculated)
8.754
GRAVY (calculated)
-0.183
Length
304 amino acids
Sequence
(BLAST)
001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.