Factsheet for Bra037372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11869	Canola	cytosol	77.22	86.96
Bra006820.1-P	Field mustard	mitochondrion	71.04	55.59
AT5G57450.2	Thale cress	nucleus	55.21	47.04
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	43.24	37.33
PGSC0003DMT400052651	Potato	nucleus	39.38	35.54
Solyc07g055170.1.1	Tomato	cytosol	39.0	35.44
GSMUA_Achr9P13630_001	Banana	cytosol	38.22	35.11
KRH01614	Soybean	nucleus	38.22	34.38
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	33.98	30.99
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	33.98	30.99
Os02t0562100-00	Rice	plastid	33.2	29.66
Zm00001d016839_P001	Maize	plastid	32.82	29.21
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	33.2	28.2
OQU85146	Sorghum	plastid	33.2	27.04
HORVU6Hr1G046290.5	Barley	plastid	33.98	23.28
Bra006580.1-P	Field mustard	cytosol	20.46	15.5
Bra002334.1-P	Field mustard	cytosol	20.46	15.5
Bra004897.1-P	Field mustard	nucleus	20.46	14.32
Bra001890.1-P	Field mustard	nucleus	3.86	11.9
Bra023796.1-P	Field mustard	nucleus	14.67	11.45
Bra035691.1-P	Field mustard	cytosol	17.76	9.91

Protein Annotations

EnsemblPlants:Bra037372.1	EnsemblPlants:Bra037372.1-P	EnsemblPlantsGene:Bra037372	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:P-loop_NTPase
PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	PFAM:PF08423	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0002541A3B
UniProt:M4F8G0	MapMan:35.1	:	:	:	:

Description

AT5G57450 (E=2e-052) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding

Coordinates

chrA09:-:838655..839544

Molecular Weight (calculated)

28487.0 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.146

Length

259 amino acids

Sequence
(BLAST)

001: MKPRSLLSQS PTSLKLTTGC ETLDACIHGG FPCDSLTEII ARAAAGKHSS AFSSRSAPSF RFQTAGSTAQ LSIFTPRFPS RFAVSTSSRD RFIYQTLVST
101: RTTTIIPAIM SSCKTFTISE FENTPSDLRK RASCFFKISG KLKQLANKFG LAVVITNQVT DFVESSDGLR IGNLRCLYSS GRRVVPALGL AWANCVNSRV
201: FIARSDDTIC QEGRDDDERS GSSYVSRRAR RRLDIFFSPH LRASSCDFVI TREGICGVR

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.