Factsheet for Bra035691.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53383	Canola	cytosol	96.98	98.04
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	70.04	87.6
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	55.39	69.27
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	52.8	66.04
KRH10360	Soybean	mitochondrion, nucleus, plastid	53.02	65.08
PGSC0003DMT400065314	Potato	cytosol	30.39	64.38
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	8.84	59.42
GSMUA_Achr8P21040_001	Banana	nucleus	46.12	56.91
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	43.75	55.92
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	44.18	55.56
EES18935	Sorghum	cytosol, peroxisome, plastid	43.53	55.49
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	43.97	55.28
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	43.53	55.19
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	43.97	54.99
Zm00001d010986_P001	Maize	vacuole	41.38	53.63
Bra001890.1-P	Field mustard	nucleus	4.74	26.19
Bra006580.1-P	Field mustard	cytosol	17.67	23.98
Bra002334.1-P	Field mustard	cytosol	17.46	23.68
Bra023796.1-P	Field mustard	nucleus	16.16	22.59
Bra006820.1-P	Field mustard	mitochondrion	15.52	21.75
Bra004897.1-P	Field mustard	nucleus	16.81	21.08
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	9.91	17.76

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra035691	EnsemblPlants:Bra035691.1	EnsemblPlants:Bra035691.1-P
InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033063	InterPro:IPR020588
UniProt:M4F3P1	InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF15
InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF47789	SUPFAM:SSF52540	UniParc:UPI0002544031

Description

AT2G28560 (E=7e-182) ATRAD51B, RAD51B | RAD51B; recombinase

Coordinates

chrA04:-:12801958..12806347

Molecular Weight (calculated)

51135.1 Da

IEP (calculated)

9.604

GRAVY (calculated)

-0.139

Length

464 amino acids

Sequence
(BLAST)

001: MANKLIGEMD LHKRISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIQ SAVKLISQAA SPPCLSARSL LEQKVEKEYL SGHLPTHLKG LDSALCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPK AYGGLDGRVI YIDVESKFSS RRVIEMGLKS FPEVFHLKGM AQEMAGRILV LRPTSLSDFT QSIQELKESI
201: LKNQVKLLVI DSMTALLSGE NKPGAQRQQH QLGWHISFLK SLAEFARIPI VVTNQVRSQN RDETSQYSFQ AKLKDGFQEH TRTYDSHLVA ALGINWAHAV
301: TIRLVLESKS GQRIIKVAKS PMSPPLAFPF HITSAGISLL SDEGTELKGP GINNIHARAK LKDRFQEHTR RYDSHLVAAL GINWDHAVTI RLVLEAKSGQ
401: RIIKVAKSPM SPPLAFPFHI TSEGISLFSD DGAELKGPGI NNIHARGHSD MINFNGDCSQ WNKD

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.