Factsheet for VIT_06s0004g03600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	14.56	78.26
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	76.28	76.28
PGSC0003DMT400065314	Potato	cytosol	42.32	71.69
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	69.81	69.81
KRH10360	Soybean	mitochondrion, nucleus, plastid	70.89	69.58
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	60.11	61.43
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	60.11	60.43
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	59.57	60.38
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	59.57	59.89
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	59.84	59.84
GSMUA_Achr8P21040_001	Banana	nucleus	60.38	59.57
EES18935	Sorghum	cytosol, peroxisome, plastid	57.68	58.79
Zm00001d010986_P001	Maize	vacuole	55.53	57.54
CDY53383	Canola	cytosol	69.54	56.21
CDX77188	Canola	cytosol	69.0	55.77
Bra035691.1-P	Field mustard	cytosol	69.27	55.39
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	21.83	27.0
VIT_05s0020g04170.t01	Wine grape	nucleus	23.45	25.0
VIT_11s0016g00340.t01	Wine grape	cytosol	21.29	23.44
VIT_15s0048g00380.t01	Wine grape	nucleus	21.29	22.83

Protein Annotations

EntrezGene:100250095	wikigene:100250095	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	ProteinID:CBI16239
ProteinID:CBI16239.3	UniProt:D7SKR1	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	EMBL:FN594951	GO:GO:0000003
GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000707	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518
GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005657	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006312
GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787	GO:GO:0033063
GO:GO:0042148	InterPro:IPR020588	EntrezGene:LOC100250095	wikigene:LOC100250095	InterPro:P-loop_NTPase	PFAM:PF08423
PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0001BE0F82	ArrayExpress:VIT_06s0004g03600	EnsemblPlantsGene:VIT_06s0004g03600	EnsemblPlants:VIT_06s0004g03600.t01
RefSeq:XP_002281874	RefSeq:XP_002281874.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:4511274..4517147

Molecular Weight (calculated)

40564.1 Da

IEP (calculated)

6.394

GRAVY (calculated)

0.046

Length

371 amino acids

Sequence
(BLAST)

001: MANKLISEMG LPTSIANIFA ARNITTAKEA LSLTEFELME LLDVGMARVT SAVAHISEIV SPPTQTALSL MEQRVQNEYM AGHLPTRLKG LDEALGGGIP
101: FGVLTELVGP PGIGKTQFCL KLSLLASLPA SYGGLDGRVI YIDAESKFSS RRMIEIGSKS FPEIFHVEGM AKEACPLILV LRPTSLSEFT ESLQHIKISL
201: LQNHVKLLVI DSMAALVTGE YDQGPTRQHS LGWHISFVKS VAEFSRIPIV VTNQVRSQSH DGTSQYSFQV ESRGETVDDH TRFDSHLVAA LGIHWAHAVT
301: IRLVLEAKAG QRFLKVAKSP ISPPLAFPFN ITPSGISLLN DEGIEMKGPQ ISTIHYQGHE DIINFDSERL Q

Best Arabidopsis Sequence Match ( AT2G28560.2 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGHS DMINFHGDCS

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.