CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	69.58	70.89
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	12.7	69.57
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	68.25	69.54
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	66.67	67.92
PGSC0003DMT400065314	Potato	cytosol	37.04	63.93
GSMUA_Achr8P21040_001	Banana	nucleus	58.47	58.78
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	56.35	58.68
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	56.35	57.72
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	55.56	57.38
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	55.82	57.18
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	56.08	57.14
EES18935	Sorghum	cytosol, peroxisome, plastid	54.76	56.87
Zm00001d010986_P001	Maize	vacuole	52.65	55.59
CDY53383	Canola	cytosol	65.61	54.03
CDX77188	Canola	cytosol	65.08	53.59
Bra035691.1-P	Field mustard	cytosol	65.08	53.02
KRH01614	Soybean	nucleus	19.84	26.04
KRH35438	Soybean	nucleus	22.75	24.93
KRH65320	Soybean	mitochondrion, nucleus	21.96	23.92
KRH02540	Soybean	cytosol	21.43	23.62
KRH19405	Soybean	cytosol	21.43	23.55
KRG91377	Soybean	cytosol	7.67	20.0

Protein Annotations

EntrezGene:100789073	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	EMBL:ACUP02009139	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	EnsemblPlantsGene:GLYMA_15G044300	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000707	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212
GO:GO:0016043	GO:GO:0016787	GO:GO:0033063	GO:GO:0042148	UniProt:I1MDL7	InterPro:IPR020588
EnsemblPlants:KRH10360	ProteinID:KRH10360	ProteinID:KRH10360.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI000233B8F1	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:3501499..3506239

Molecular Weight (calculated)

41204.4 Da

IEP (calculated)

7.094

GRAVY (calculated)

0.198

Length

378 amino acids

Sequence
(BLAST)

001: MANKLINQMG LPKSIVNIFT ARNIITAKDA LSHTEFELME LLDVGKEEVT SAMAHVSEVV CPPCQTALLL LEQRVLNESL AGHLSTRLKG LDEALCGGIP
101: FGVLTELVGP AGIGKTQFCL KLSLLASLPT NCGGLDGRVI YIDVESKFRS KRLIEIGINS FPEIFLKKGM AQEMAGRILI LHPTSLSEFA ESLHQIRVSL
201: LQQQVKLLII DSMAALVLGE HDSEASRQQA LGWHVSFIKS LAEFSRIPVV LTNQVRSQIG DESRMYSFQA QSHSIIKDNP ATYDSHLVAA LGINWAHAVT
301: IRLVLEARSG QRFIKLAKSP ISAPLAFPFK ITSSGLVLLD DEGIEMKGPE INTIHCQGLS LSTLAVSSAE YILRTKNA

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.