Factsheet for TraesCS1D01G059600.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	98.38	98.92
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	97.57	98.1
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	95.42	96.72
EES18935	Sorghum	cytosol, peroxisome, plastid	83.02	84.62
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	81.13	82.92
Zm00001d010986_P001	Maize	vacuole	77.63	80.45
GSMUA_Achr8P21040_001	Banana	nucleus	63.34	62.5
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	61.46	61.46
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	59.84	59.84
PGSC0003DMT400065314	Potato	cytosol	35.31	59.82
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	10.78	57.97
KRH10360	Soybean	mitochondrion, nucleus, plastid	57.14	56.08
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	54.72	54.72
CDY53383	Canola	cytosol	55.26	44.66
CDX77188	Canola	cytosol	54.45	44.01
Bra035691.1-P	Field mustard	cytosol	54.99	43.97
TraesCS2D01G214900.1	Wheat	cytosol	20.22	25.86
TraesCS5D01G141200.1	Wheat	nucleus	22.64	24.42
TraesCS7D01G381300.1	Wheat	cytosol	21.56	23.39
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	17.79	23.24

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0033063	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423
PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1D01G059600	EnsemblPlants:TraesCS1D01G059600.2	TIGR:cd01393	SEG:seg

Description

No Description!

Coordinates

chr1D:-:39868469..39872665

Molecular Weight (calculated)

40168.0 Da

IEP (calculated)

7.445

GRAVY (calculated)

0.088

Length

371 amino acids

Sequence
(BLAST)

001: MANKLVSDMC LPPHLAHLLA ARRLTTAKDV LSLPEVELMS LLDAGLATAR DAVCRVSEFA CPPCQTALAL LEERVRLGGG GRLATTLCGL DEALGGGIPL
101: GKLTEVVGPS GIGKTQFCLK LALLATLPEC YGGLNGRVVY IDTESKFSSR RMIEIGQKSF PQIFRQEGLA QKMAGRILVM RPSSLSDFTK SLEQMKVTLL
201: QNDVKLLIVD SVAAFMSSEN ERGTTGFTQH PLRWALSFLK SIAELTRIPV VVSNQVRSQS NDDGYHYSFE VKRMGDGDGA ERLESHLVAA LGIQWAHAVT
301: IRLVFESHSG QRFIKVAKSP MSPAVAFPFI VESSGITLLN DEGIDVSGPE ITSIRCQGQN LLGLLPFENR G

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.