Factsheet for TraesCS2D01G214900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G208200.1	Wheat	cytosol	98.62	98.62
TraesCS2B01G234700.3	Wheat	cytosol	99.31	91.14
KXG31586	Sorghum	cytosol	84.48	86.88
Zm00001d044278_P001	Maize	cytosol	82.76	81.63
Os01t0578000-01	Rice	cytosol	85.86	71.35
GSMUA_Achr5P14000_001	Banana	cytosol	70.69	69.73
Solyc05g050960.2.1	Tomato	cytosol	49.66	67.61
HORVU0Hr1G003380.15	Barley	cytosol	55.52	65.71
CDY68195	Canola	cytosol, nucleus, plastid	64.83	61.84
VIT_15s0048g00380.t01	Wine grape	nucleus	70.34	58.96
KRH65320	Soybean	mitochondrion, nucleus	65.86	55.04
CDY18933	Canola	plastid	64.83	54.18
PGSC0003DMT400018063	Potato	nucleus	65.52	52.05
Bra004897.1-P	Field mustard	nucleus	64.83	50.81
AT2G45280.2	Thale cress	nucleus, plastid	66.21	49.61
CDX74725	Canola	nucleus	65.17	46.78
Solyc05g050950.2.1	Tomato	plastid	13.1	30.89
TraesCS5D01G141200.1	Wheat	nucleus	31.03	26.16
TraesCS7D01G381300.1	Wheat	cytosol	28.28	23.98
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	20.34	20.77
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	25.86	20.22

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007140	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2D01G214900	EnsemblPlants:TraesCS2D01G214900.1
TIGR:cd01123	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:176517524..176524238

Molecular Weight (calculated)

31989.4 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.074

Length

290 amino acids

Sequence
(BLAST)

001: MAPNEIAQKL LLQGAQNAWD MLSEEQSQKH ITTGSGDLNG ILGGGIHCKE VTEIGGVPGI GKTQLGIQLA INVQIPVDYG GLGGKAIYID TEGSFMVERV
101: YQIAEGCISD IMEYFPCHHD KSSSGQENLQ PESFLAGIYY FRICSYTEQI AVINYLEKFL GEHKDVRIVI IDSVTFHFRQ DFDDLALRTR VLSGLSLKLM
201: KLSKSYNLAV VLLNQVTTKF TEGSFQLTLA LGDSWSHSCT NRLILYWKGN ERCAYLDKSP SLPVASTPYA VTSKGVRDAG SSSCKRVRVM

Best Arabidopsis Sequence Match ( AT2G45280.2 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.