Factsheet for PGSC0003DMT400018063

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
cytosol 2
nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050960.2.1	Tomato	cytosol	57.53	98.59
Solyc05g050950.2.1	Tomato	plastid	32.33	95.94
VIT_15s0048g00380.t01	Wine grape	nucleus	72.33	76.3
CDY68195	Canola	cytosol, nucleus, plastid	62.47	75.0
CDY18933	Canola	plastid	70.14	73.78
KRH65320	Soybean	mitochondrion, nucleus	65.48	68.88
GSMUA_Achr5P14000_001	Banana	cytosol	54.79	68.03
KXG31586	Sorghum	cytosol	50.68	65.6
TraesCS2D01G214900.1	Wheat	cytosol	52.05	65.52
AT2G45280.2	Thale cress	nucleus, plastid	69.04	65.12
TraesCS2A01G208200.1	Wheat	cytosol	51.51	64.83
Bra004897.1-P	Field mustard	nucleus	65.48	64.59
Zm00001d044278_P001	Maize	cytosol	51.78	64.29
CDX74725	Canola	nucleus	70.68	63.86
Os01t0578000-01	Rice	cytosol	59.45	62.18
TraesCS2B01G234700.3	Wheat	cytosol	51.78	59.81
HORVU0Hr1G003380.15	Barley	cytosol	32.88	48.98
PGSC0003DMT400077570	Potato	nucleus	24.38	26.1
PGSC0003DMT400052651	Potato	nucleus	20.0	25.44
PGSC0003DMT400065314	Potato	cytosol	11.23	18.72
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	2.19	11.59

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007140	GO:GO:0007141	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003
GO:GO:0051321	InterPro:IPR020588	UniProt:M1A9Z5	InterPro:P-loop_NTPase	PFAM:PF08423	EnsemblPlantsGene:PGSC0003DMG400007020
PGSC:PGSC0003DMG400007020	EnsemblPlants:PGSC0003DMT400018063	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000295BB4D	SEG:seg	:

Description

DNA repair and recombination protein radA [Source:PGSC_GENE;Acc:PGSC0003DMG400007020]

Coordinates

chr5:+:45532269..45537484

Molecular Weight (calculated)

40651.9 Da

IEP (calculated)

7.387

GRAVY (calculated)

-0.115

Length

365 amino acids

Sequence
(BLAST)

001: MTILSFSSNF ERENPEKIVM EVSSLPISAS LRAKLISGGY TSISSLFSVS HSDIARDLKI SENEALEILR VASQRRGSER SNGTSSIVNG AQSAWEMLNE
101: EKSLGRITTS CSELDDILGG GISCREVTEI GGVPGIGKTQ LGIQLAVNVQ IPMDYGGLQG KAVYIDTEGS FMVERALQIA EACLEDMREY HGFLKRDLQA
201: CQVNMQPKDF LENIFYFRVC SYTEQIAVVN YLEKFISEHK DVKVVIIDSI TFHFRQDFDD MALRTRLLGG MALKLMKLAK KYTLAVILLN QVTTKYTDGQ
301: YQLTLALGDS WSHACTNRVI LYWNGNERYA YIDKSPSVRS AAAAYSITGR GIRSSVSNCK RVKMM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.