Factsheet for HORVU0Hr1G003380.15

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G214900.1	Wheat	cytosol	65.71	55.52
TraesCS2A01G208200.1	Wheat	cytosol	64.9	54.83
KXG31586	Sorghum	cytosol	62.04	53.9
TraesCS2B01G234700.3	Wheat	cytosol	65.71	50.95
Zm00001d044278_P001	Maize	cytosol	60.82	50.68
Solyc05g050960.2.1	Tomato	cytosol	39.59	45.54
Os01t0578000-01	Rice	cytosol	62.86	44.13
GSMUA_Achr5P14000_001	Banana	cytosol	48.98	40.82
CDY68195	Canola	cytosol, nucleus, plastid	43.67	35.2
VIT_15s0048g00380.t01	Wine grape	nucleus	48.57	34.39
KRH65320	Soybean	mitochondrion, nucleus	46.94	33.14
PGSC0003DMT400018063	Potato	nucleus	48.98	32.88
CDY18933	Canola	plastid	43.67	30.84
Bra004897.1-P	Field mustard	nucleus	44.08	29.19
AT2G45280.2	Thale cress	nucleus, plastid	44.49	28.17
CDX74725	Canola	nucleus	44.08	26.73
HORVU5Hr1G040730.2	Barley	nucleus	21.63	15.32
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	20.41	13.55
Solyc05g050950.2.1	Tomato	plastid	5.71	11.38
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	16.73	11.11
HORVU6Hr1G046290.5	Barley	plastid	13.47	8.73

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	UniProt:A0A287DVC8	ncoils:Coil	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000003
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0007140	GO:GO:0007141	GO:GO:0007143	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787
GO:GO:0045003	GO:GO:0051321	EnsemblPlantsGene:HORVU0Hr1G003380	EnsemblPlants:HORVU0Hr1G003380.15	InterPro:IPR020588	InterPro:P-loop_NTPase
PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14	InterPro:RecA_ATP-bd	SUPFAM:SSF52540
UniParc:UPI000B485CAF	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:14065575..14067175

Molecular Weight (calculated)

23602.5 Da

IEP (calculated)

6.236

GRAVY (calculated)

0.037

Length

245 amino acids

Sequence
(BLAST)

001: LILLGLGGVP GVGKTQLGIQ LAINVQIPVD YGGLGGKAVY IDTEGSFMVE RVYQIAEGCI SDIMEYFPCH HDKASSGQEN LQPESFLAGI YYFRICSYTE
101: QIAVINYLEK FLGEHKDVRI VIIDSVTFHF RQDFEDLALR TRVLSGLSLK LMKLSKAYNL ALLLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDN
201: QPAVFYAHNN KSSNASKTID IKYYVVKDQI QDQTISLEHI STKSI

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.