Factsheet for HORVU5Hr1G040730.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G015880.36
HORVU3Hr1G017990.10
HORVU5Hr1G040730.2
HORVU7Hr1G091450.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	HORVU5Hr1G040730.2	AT3G22880.1	15014444
AT3G22880.1	HORVU3Hr1G015880.36	AT5G01630.1	15014444
AT3G22880.1	HORVU3Hr1G017990.10	AT5G01630.1	15014444
AT3G22880.1	HORVU3Hr1G015880.36	AT5G01630.1	16415210
AT3G22880.1	HORVU3Hr1G017990.10	AT5G01630.1	16415210
AT3G22880.1	HORVU7Hr1G091450.2	AT5G20850.1	15014444
AT3G22880.1	HORVU7Hr1G091450.2	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G133000.1	Wheat	nucleus	98.55	98.55
OQU78622	Sorghum	nucleus	93.35	96.13
TraesCS5D01G141200.1	Wheat	nucleus	95.09	95.64
TraesCS5B01G131900.1	Wheat	nucleus	94.51	95.06
Os11t0146800-01	Rice	nucleus	93.93	94.48
Os12t0143800-01	Rice	mitochondrion	92.49	93.02
OQU84696	Sorghum	nucleus	92.2	92.73
Solyc09g082790.2.1	Tomato	nucleus	82.37	85.33
Zm00001d044629_P001	Maize	nucleus	92.49	84.43
VIT_05s0020g04170.t01	Wine grape	nucleus	83.24	82.76
Bra023796.1-P	Field mustard	nucleus	78.9	82.23
CDY46610	Canola	nucleus	78.9	82.23
Zm00001d050876_P001	Maize	cytosol	19.65	81.93
KRH35438	Soybean	nucleus	80.92	81.16
PGSC0003DMT400077570	Potato	nucleus	79.19	80.35
AT3G22880.1	Thale cress	nucleus	78.9	79.36
GSMUA_Achr8P26880_001	Banana	nucleus	84.68	75.91
CDX92963	Canola	nucleus	18.21	75.0
Bra001890.1-P	Field mustard	nucleus	18.21	75.0
CDY34225	Canola	mitochondrion	78.9	72.41
KRG91377	Soybean	cytosol	28.61	68.28
Zm00001d035787_P001	Maize	cytosol	32.37	67.88
Zm00001d016055_P001	Maize	plastid	47.11	59.27
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	49.13	46.07
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	23.7	22.22
HORVU0Hr1G003380.15	Barley	cytosol	15.32	21.63
HORVU6Hr1G046290.5	Barley	plastid	17.05	15.61

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	UniProt:A0A287QXG2	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0051026	EnsemblPlantsGene:HORVU5Hr1G040730	EnsemblPlants:HORVU5Hr1G040730.2	InterPro:IPR020587
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF47794
SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI000B46CBB0	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:304464584..304469313

Molecular Weight (calculated)

37962.2 Da

IEP (calculated)

5.942

GRAVY (calculated)

-0.041

Length

346 amino acids

Sequence
(BLAST)

001: MAPSKQYDEG GQLQLMEADR VEEEEECFES IDKLITQGIN AGDVKKLQDA GIYTCNGLMM HTKKSLTGIK GLSEAKVDKI CEAAEKLLSQ GFMTGSDLLI
101: KRKSVVRITT GSQALDELLG GGIETLCITE AFGEFRSGKT QLAHTLCVST QLPLHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFRLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDPKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA ISFCSILVYC LCYSLL

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.