Factsheet for Bra001890.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92963	Canola	nucleus	100.0	100.0
Zm00001d016055_P001	Maize	plastid	76.19	23.27
Bra023796.1-P	Field mustard	nucleus	80.95	20.48
Solyc09g082790.2.1	Tomato	nucleus	76.19	19.16
OQU78622	Sorghum	nucleus	75.0	18.75
KRH35438	Soybean	nucleus	76.19	18.55
PGSC0003DMT400077570	Potato	nucleus	75.0	18.48
Os11t0146800-01	Rice	nucleus	75.0	18.31
OQU84696	Sorghum	nucleus	75.0	18.31
TraesCS5A01G133000.1	Wheat	nucleus	75.0	18.21
HORVU5Hr1G040730.2	Barley	nucleus	75.0	18.21
VIT_05s0020g04170.t01	Wine grape	nucleus	75.0	18.1
TraesCS5D01G141200.1	Wheat	nucleus	73.81	18.02
TraesCS5B01G131900.1	Wheat	nucleus	73.81	18.02
Os12t0143800-01	Rice	mitochondrion	72.62	17.73
Zm00001d044629_P001	Maize	nucleus	75.0	16.62
GSMUA_Achr8P26880_001	Banana	nucleus	71.43	15.54
Bra006580.1-P	Field mustard	cytosol	46.43	11.4
Bra002334.1-P	Field mustard	cytosol	46.43	11.4
Bra004897.1-P	Field mustard	nucleus	35.71	8.11
KRG91377	Soybean	cytosol	13.1	7.59
Bra006820.1-P	Field mustard	mitochondrion	25.0	6.34
Bra035691.1-P	Field mustard	cytosol	26.19	4.74
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	11.9	3.86
Zm00001d050876_P001	Maize	cytosol	1.19	1.2
Zm00001d035787_P001	Maize	cytosol	1.19	0.61

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra001890	EnsemblPlants:Bra001890.1	EnsemblPlants:Bra001890.1-P	InterPro:DNA_recomb/repair_Rad51_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588	UniProt:M4CCG0
InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:RecA_ATP-bd
SUPFAM:SSF52540	UniParc:UPI0002540736	:	:	:	:

Description

AT3G22880 (E=3e-030) ATDMC1, DMC1, ARLIM15 | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1); ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding

Coordinates

chrA03:-:19150557..19151171

Molecular Weight (calculated)

8831.8 Da

IEP (calculated)

9.741

GRAVY (calculated)

-0.026

Length

84 amino acids

Sequence
(BLAST)

1: MTGSDALLKR KSVVRITTGC QALDDLLGAI TEASGGFRSG KTQLAHTLCV TTQAGFFPKV LLPKNMKGGN GKVAYIDTEG TLYP

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.