Factsheet for Os12t0143800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0164800-01
Os01t0164900-01
Os09t0280600-01
Os09t0506800-02
Os11t0146800-01
Os11t0615800-01
Os12t0143800-01
Os12t0497300-01
Os12t0606600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Os09t0506800-02	AT1G67370.1	17937504
AT3G22880.1	Os12t0606600-01	AT1G67370.1	17937504
AT3G22880.1	Os11t0146800-01	AT3G22880.1	15014444
AT3G22880.1	Os12t0143800-01	AT3G22880.1	15014444
AT3G22880.1	Os09t0280600-01	AT4G29170.1	17937504
AT3G22880.1	Os01t0164800-01	AT5G01630.1	15014444
AT3G22880.1	Os01t0164900-01	AT5G01630.1	15014444
AT3G22880.1	Os01t0164800-01	AT5G01630.1	16415210
AT3G22880.1	Os01t0164900-01	AT5G01630.1	16415210
AT3G22880.1	Os11t0615800-01	AT5G20850.1	15014444
AT3G22880.1	Os12t0497300-01	AT5G20850.1	15014444
AT3G22880.1	Os11t0615800-01	AT5G20850.1	16415210
AT3G22880.1	Os12t0497300-01	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0146800-01	Rice	nucleus	98.55	98.55
TraesCS5D01G141200.1	Wheat	nucleus	95.93	95.93
TraesCS5B01G131900.1	Wheat	nucleus	95.35	95.35
OQU84696	Sorghum	nucleus	95.06	95.06
OQU78622	Sorghum	nucleus	90.99	93.15
TraesCS5A01G133000.1	Wheat	nucleus	93.31	92.77
HORVU5Hr1G040730.2	Barley	nucleus	93.02	92.49
VIT_05s0020g04170.t01	Wine grape	nucleus	85.47	84.48
KRH35438	Soybean	nucleus	83.72	83.48
Solyc09g082790.2.1	Tomato	nucleus	80.81	83.23
Zm00001d044629_P001	Maize	nucleus	90.7	82.32
Zm00001d050876_P001	Maize	cytosol	19.77	81.93
AT3G22880.1	Thale cress	nucleus	81.1	81.1
CDY46610	Canola	nucleus	78.2	81.02
Bra023796.1-P	Field mustard	nucleus	78.2	81.02
PGSC0003DMT400077570	Potato	nucleus	78.49	79.18
GSMUA_Achr8P26880_001	Banana	nucleus	86.05	76.68
KRG91377	Soybean	cytosol	30.81	73.1
Bra001890.1-P	Field mustard	nucleus	17.73	72.62
CDX92963	Canola	nucleus	17.73	72.62
CDY34225	Canola	mitochondrion	78.2	71.35
Zm00001d035787_P001	Maize	cytosol	32.27	67.27
Zm00001d016055_P001	Maize	plastid	47.09	58.91
Os11t0615800-01	Rice	cytosol	51.45	52.21
Os12t0497300-01	Rice	cytosol	50.87	51.32
Os01t0578000-01	Rice	cytosol	27.33	26.93
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	25.29	23.97
Os02t0562100-00	Rice	plastid	20.06	23.79

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	EntrezGene:4351482	EMBL:AB079873	EMBL:AK110641
ProteinID:BAF29157.1	ProteinID:BAT15865.1	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000730	GO:GO:0000794
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824
GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787
GO:GO:0042148	GO:GO:0070192	InterPro:IPR020587	InterPro:IPR020588	EnsemblPlantsGene:Os12g0143800	EnsemblPlants:Os12t0143800-01
InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942
PANTHER:PTHR22942:SF30	UniProt:Q7GBF8	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF47794
SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI00000A957E	RefSeq:XP_015618986.1	SEG:seg	:

Description

MEIOTIC PROTEIN DMC1AMeiosis-specific DNA recombinase, Synaptonemal complex (SC) assembly (Os12t0143800-01)

Coordinates

chr12:-:2154058..2158284

Molecular Weight (calculated)

37544.6 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.099

Length

344 amino acids

Sequence
(BLAST)

001: MAPSKQYSEG GQLQLMDAER IEEEEECFES IDKLISQGIN SGDVKKLQDA GIYTCNGLMM HTKKSLTGIK GLSEAKVDKI CEAAEKLLSQ GFITGSDLLI
101: KRKSVVRITT GSQALDKLLG GGIETLCITE AFGEFRSGKT QLAHTLCVSA QLPIHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFRLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDLKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA VFQVTSGGIM DAKD

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.