Factsheet for Os01t0164900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0146800-01
Os11t0615800-01
Os12t0143800-01
Os12t0497300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	Os11t0146800-01	AT3G22880.1	15014444
AT5G01630.1	Os12t0143800-01	AT3G22880.1	15014444
AT5G01630.1	Os11t0146800-01	AT3G22880.1	16415210
AT5G01630.1	Os12t0143800-01	AT3G22880.1	16415210
AT5G01630.1	Os11t0615800-01	AT5G20850.1	15014444
AT5G01630.1	Os12t0497300-01	AT5G20850.1	15014444
AT5G01630.1	Os11t0615800-01	AT5G20850.1	16415210
AT5G01630.1	Os12t0497300-01	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0164800-01	Rice	cytosol, mitochondrion	5.61	10.67
Solyc02g050210.1.1	Tomato	cytosol	7.07	9.58
VIT_08s0058g00500.t01	Wine grape	cytosol	10.39	9.14
CDY08306	Canola	nucleus	10.81	9.06
CDY64035	Canola	nucleus	19.75	8.98
TraesCS3B01G104500.1	Wheat	nucleus	15.18	8.76
TraesCS3D01G089500.2	Wheat	nucleus	15.18	8.42
CDX80759	Canola	nucleus	18.92	8.22
TraesCS3A01G089200.3	Wheat	nucleus	14.97	8.18
Bra037060.1-P	Field mustard	nucleus	19.13	7.94
KRH17731	Soybean	mitochondrion	17.46	7.91
AT5G01630.1	Thale cress	nucleus	18.5	7.71
AT4G00020.2	Thale cress	nucleus	18.92	7.67
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	14.55	7.58
Bra005674.1-P	Field mustard	nucleus	16.63	7.55
CDY11187	Canola	nucleus	17.88	7.42
TraesCS3A01G099300.4	Wheat	nucleus	24.32	7.39
TraesCS3D01G099600.1	Wheat	nucleus	24.53	7.25
TraesCS3B01G115500.3	Wheat	nucleus	23.91	7.07
HORVU3Hr1G017990.10	Barley	nucleus, plastid	24.53	7.06
GSMUA_Achr5P28060_001	Banana	nucleus	12.89	6.75
Solyc02g050200.1.1	Tomato	nucleus	11.02	6.69
Zm00001d024953_P024	Maize	nucleus	21.41	6.68

Protein Annotations

MapMan:35.2	InterPro:BRCA2_repeat	ncoils:Coil	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003697	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002093	EnsemblPlantsGene:Os01g0164900
EnsemblPlants:Os01t0164900-01	PFAM:PF00634	PFscan:PS50138	UniParc:UPI000393B1F8	SEG:seg	:

Description

OsBRCA2BRCA2 repeat containing protein. (Os01t0164900-01)

Coordinates

chr1:-:3351926..3355066

Molecular Weight (calculated)

50367.9 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.398

Length

481 amino acids

Sequence
(BLAST)

001: MQRRWQVWGK PDGSLVWVPA SDGPPPPAAA ASEAPLPRPD PQPAATELGE ARSGDAIPEG PGAADGCSVP SMADLFNQAL DKLVAADGMA EAIEDSGKGA
101: VFCTGLGGSV AVSERAVERA KALVGEVAEE ISNERRQPFG DGSNLECGLG ESNVSFKGGV HKDSLSPMFQ TGSGKMVSLS KGSIQKARAV LEGNAENSSV
201: IAVQSMFHTG LVRPDPVSRS STDNAMTVLE GQTNPKQGDV ADVYDKENFP LFQTGSGKAV SVSVASIQKA KAVLEQNNTV ENTEDFGRPD QSLIFQTGSR
301: RPVLISERSS SVVKDGGAEN IVFQTGLGRP VVVSQTSIQK ARTVLDQECA KRSGHGDTNV STTTFQTETP TSVLMSGGLT MNDRSVTPEG GVSMQGNFLE
401: ADGHLPLFQT GLGRSISVSK GSIKRASALL EPRNITKELE DEAHSDDGCA TPMFKTGSGR SITASENSRK KAHVVLEGEE P

Best Arabidopsis Sequence Match ( AT4G00020.3 )
(BLAST)

001: MSTWQLFPDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIARE EAMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAEKVTYSD
101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQ

Arabidopsis Description

MEE43BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.