Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G01630.1 | Thale cress | nucleus | 88.88 | 91.34 |
| Bra005674.1-P | Field mustard | nucleus | 66.98 | 75.0 |
| CDX80759 | Canola | nucleus | 68.91 | 73.89 |
| CDY11187 | Canola | nucleus | 69.92 | 71.61 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 27.8 | 60.33 |
| Solyc02g050210.1.1 | Tomato | cytosol | 14.57 | 48.73 |
| KRH17731 | Soybean | mitochondrion | 39.09 | 43.69 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 8.93 | 41.9 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 31.0 | 40.04 |
| Solyc02g050200.1.1 | Tomato | nucleus | 25.19 | 37.75 |
| Zm00001d024953_P024 | Maize | nucleus | 34.54 | 26.57 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 32.77 | 24.57 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 33.19 | 24.23 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 33.11 | 24.14 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 33.36 | 23.68 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.67 | 18.92 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 7.67 | 10.92 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 7.41 | 10.15 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 7.41 | 10.0 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 7.5 | 9.63 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | EntrezGene:828230 | ProteinID:AEE81814.1 | ArrayExpress:AT4G00020 |
| EnsemblPlantsGene:AT4G00020 | RefSeq:AT4G00020 | TAIR:AT4G00020 | RefSeq:AT4G00020-TAIR-G | EnsemblPlants:AT4G00020.2 | TAIR:AT4G00020.2 |
| InterPro:BRCA2 | InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | UniProt:F4JGU5 |
| GO:GO:0000003 | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009553 |
| GO:GO:0009653 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:0048314 | InterPro:IPR002093 | Symbol:MEE43 | InterPro:NA-bd_OB-fold | RefSeq:NP_001154192.1 | PFAM:PF00634 |
| PFAM:PF09103 | PFAM:PF09169 | PIRSF:PIRSF002397 | PO:PO:0000293 | PFscan:PS50138 | PANTHER:PTHR11289 |
| SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 | UniParc:UPI0001A7B285 | SEG:seg | : |
Description
MEE43BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]
Coordinates
chr4:-:2895..10364
Molecular Weight (calculated)
130745.0 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.360
Length
1187 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTWQLFPDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIARE EAMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAEKVTYSD
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESEKVCDRSF EACMWIVWKL ACYDIYYPAK CRGNFLTITN
0601: VLEELKYRYE REVNHGHCSA IKRILSGDAP ASSMMVLCIS AINPKTDNDS QEAHCSDSCS NVKVELTDGW YSMNAALDVV LTKQLNAGKL FVGQKLRILG
0701: AGLSGWATPT SPLEAVISST ICLLLNINGT YRAHWADRLG FCKEIGVPLA LNCIKCNGGP VPKTLAGIKR IYPILYKERL GEKKSIVRSE RIESRIIQLH
0801: NQRRSALVEG IMCEYQRGIN GVHSQNDTDS EEGAKIFKLL ETAAEPEFLM AEMSPEQLRS FTTYKAKFEA AQQMRKEKSV AETLEDAGLG ERNVTPFMRI
0901: RLVGLTSLSY EGEHNPKEGI VTIWDPTERQ RTELTEGKIY MMKGLVPINS DSEILYLHAR GSSSRWQPLS PKDSENFQPF FNPRKPISLS NLGEIPLSSE
1001: FDIAAYVVYV GNAYTDVLQK KQWVFVTDGS AQHSGEISNS LLAISFSTSF MDDSSVSHIS HNLVGSVVGF CNLIKRAKDV TNEIWVAEAA ENSVYFINAE
1101: AAYSSHLKTS SAHIQTWAKL SSSKSVRSRR LPLSIIIRVL SIIGACPSGL NSPDKCRAFN FFWSHSTLKL PHTAFQNRAM RVADKPP
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESEKVCDRSF EACMWIVWKL ACYDIYYPAK CRGNFLTITN
0601: VLEELKYRYE REVNHGHCSA IKRILSGDAP ASSMMVLCIS AINPKTDNDS QEAHCSDSCS NVKVELTDGW YSMNAALDVV LTKQLNAGKL FVGQKLRILG
0701: AGLSGWATPT SPLEAVISST ICLLLNINGT YRAHWADRLG FCKEIGVPLA LNCIKCNGGP VPKTLAGIKR IYPILYKERL GEKKSIVRSE RIESRIIQLH
0801: NQRRSALVEG IMCEYQRGIN GVHSQNDTDS EEGAKIFKLL ETAAEPEFLM AEMSPEQLRS FTTYKAKFEA AQQMRKEKSV AETLEDAGLG ERNVTPFMRI
0901: RLVGLTSLSY EGEHNPKEGI VTIWDPTERQ RTELTEGKIY MMKGLVPINS DSEILYLHAR GSSSRWQPLS PKDSENFQPF FNPRKPISLS NLGEIPLSSE
1001: FDIAAYVVYV GNAYTDVLQK KQWVFVTDGS AQHSGEISNS LLAISFSTSF MDDSSVSHIS HNLVGSVVGF CNLIKRAKDV TNEIWVAEAA ENSVYFINAE
1101: AAYSSHLKTS SAHIQTWAKL SSSKSVRSRR LPLSIIIRVL SIIGACPSGL NSPDKCRAFN FFWSHSTLKL PHTAFQNRAM RVADKPP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.