Factsheet for Solyc02g050200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114170.2.1
Solyc07g017540.2.1
Solyc09g082790.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	Solyc09g082790.2.1	AT3G22880.1	15014444
AT5G01630.1	Solyc09g082790.2.1	AT3G22880.1	16415210
AT5G01630.1	Solyc07g017540.2.1	AT5G20850.1	15014444
AT5G01630.1	Solyc07g017540.2.1	AT5G20850.1	16415210
AT5G01630.1	Solyc03g114170.2.1	AT5G45010.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64035	Canola	nucleus	38.26	28.64
KRH17731	Soybean	mitochondrion	38.01	28.34
CDY08306	Canola	nucleus	20.2	27.87
AT5G01630.1	Thale cress	nucleus	40.03	27.45
VIT_08s0058g00500.t01	Wine grape	cytosol	18.06	26.14
Bra037060.1-P	Field mustard	nucleus	38.01	25.99
Bra005674.1-P	Field mustard	nucleus	34.72	25.94
CDX80759	Canola	nucleus	35.73	25.56
GSMUA_Achr5P28060_001	Banana	nucleus	29.55	25.46
CDY11187	Canola	nucleus	36.87	25.19
AT4G00020.2	Thale cress	nucleus	37.75	25.19
Zm00001d024953_P024	Maize	nucleus	34.85	17.89
TraesCS3A01G099300.4	Wheat	nucleus	32.95	16.49
TraesCS3B01G115500.3	Wheat	nucleus	33.08	16.11
TraesCS3D01G099600.1	Wheat	nucleus	32.95	16.03
HORVU3Hr1G017990.10	Barley	nucleus, plastid	33.21	15.73
Os01t0164900-01	Rice	cytosol, mitochondrion	6.69	11.02
TraesCS3B01G104500.1	Wheat	nucleus	11.36	10.8
TraesCS3D01G089500.2	Wheat	nucleus	11.49	10.5
TraesCS3A01G089200.3	Wheat	nucleus	11.36	10.23
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	11.49	9.85
Solyc02g050210.1.1	Tomato	cytosol	0.76	1.69
Os01t0164800-01	Rice	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	InterPro:BRCA2	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx
InterPro:BRCA2_hlx_sf	InterPro:BRCA2_repeat	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003697	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR002093	UniProt:K4B609	InterPro:NA-bd_OB-fold
PFAM:PF00634	PFAM:PF09103	PFAM:PF09169	PFscan:PS50138	PANTHER:PTHR11289	SUPFAM:SSF50249
SUPFAM:SSF81872	EnsemblPlantsGene:Solyc02g050200.1	EnsemblPlants:Solyc02g050200.1.1	UniParc:UPI0002767AF2	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:4334763..4338880

Molecular Weight (calculated)

86163.9 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.295

Length

792 amino acids

Sequence
(BLAST)

001: MSMWQLYSVS VNDFRWKVSG ESLTEEPSLT LPPQQLQSIP DLLRQGTSRL AGNTDSTSTR FPIFRGKPVS VKHSSISTAL SILDDEDKPI LDTGIGTGRQ
101: DVLTFQEAVF QKGSGEPLNA PQSFSPSSLN KQFSMSNSLF QTASGKPVNI SCTGLNKAKA LLGLEENGDH ETFPGSGKKN TTPDELFGFR NSFPIVEVEG
201: IASTGSTNVS AASLSPFDVK FNSTVCPAEE LVADFLHSAG KPPPIKFHTA GGRSITVSCE ALKRAKSLLG DLELGCLVDE KDMADPLLSF SKDQKSVDQV
301: STKELNSDTP VSLLSAAKGS GSSSLFTSPL RSTLYHKKSS IKLENLVPAS NLIKEFDAVA KESTSRLDHS IPQNGEPFNK NSAATDLREN DIASKPKLLE
401: RPSRGPLVDI SNNIGGGIAD RNQNVGRKRK PGGSFVSPFK KPRSTSIVNP LKRNDSGAAN GFSDLAPKLP SQKGKVSIRY PFHVARLYMK EYLGKPPSIL
501: SKLESLPDDV SRMNPATAET YVFNDESCSG CIGVGSFLEM LSQSGASMQY VSKKWITNHY KWIVWKLASY ERCYSGKFSG KLLTICNVLE ELKYRYEREV
601: NHGHRSAVKR ILEGDLPPSS MMVLCVSNIY SIHVSPVGPQ SSLSSTTENG TCAKVELTDG WYSIIAVLDL QLSKKMAAGK LFVGQKLRIW GAGLCGWTGP
701: VSPLEVSGTT SLLLHINGTY RAHWASRLGF CKGGGIPLSF MSIKDGGGAV PLTLVVISRI YPVLFRERLS NRGFVVRSER MEVKEMQNFN ER

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.