Factsheet for AT5G01630.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G00020.2	Thale cress	nucleus	91.34	88.88
Bra005674.1-P	Field mustard	nucleus	72.03	78.49
CDX80759	Canola	nucleus	71.77	74.89
CDY11187	Canola	nucleus	74.63	74.37
VIT_08s0058g00500.t01	Wine grape	cytosol	29.18	61.61
Solyc02g050210.1.1	Tomato	cytosol	15.24	49.58
KRH17731	Soybean	mitochondrion	41.13	44.73
Os01t0164800-01	Rice	cytosol, mitochondrion	9.26	42.29
GSMUA_Achr5P28060_001	Banana	nucleus	33.25	41.78
Solyc02g050200.1.1	Tomato	nucleus	27.45	40.03
Zm00001d024953_P024	Maize	nucleus	36.1	27.03
TraesCS3A01G099300.4	Wheat	nucleus	34.81	25.39
TraesCS3B01G115500.3	Wheat	nucleus	35.32	25.09
TraesCS3D01G099600.1	Wheat	nucleus	35.24	25.0
HORVU3Hr1G017990.10	Barley	nucleus, plastid	35.5	24.52
Os01t0164900-01	Rice	cytosol, mitochondrion	7.71	18.5
TraesCS3B01G104500.1	Wheat	nucleus	7.79	10.8
TraesCS3D01G089500.2	Wheat	nucleus	7.62	10.15
TraesCS3A01G089200.3	Wheat	nucleus	7.36	9.66
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	7.53	9.42

Protein Annotations

MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	EntrezGene:831710	ProteinID:AED90369.1	EMBL:AJ488305
ArrayExpress:AT5G01630	EnsemblPlantsGene:AT5G01630	RefSeq:AT5G01630	TAIR:AT5G01630	RefSeq:AT5G01630-TAIR-G	EnsemblPlants:AT5G01630.1
TAIR:AT5G01630.1	InterPro:BRCA2	Symbol:BRCA2B	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx	InterPro:BRCA2_hlx_sf
InterPro:BRCA2_repeat	EMBL:BT004117	ProteinID:CAB82279.1	GO:GO:0000003	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006355	GO:GO:0006950	GO:GO:0006974
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051321
InterPro:IPR002093	InterPro:NA-bd_OB-fold	RefSeq:NP_195783.3	PFAM:PF00634	PFAM:PF09103	PFAM:PF09169
PIRSF:PIRSF002397	PO:PO:0000293	PFscan:PS50138	PANTHER:PTHR11289	UniProt:Q7Y1C4	SUPFAM:SSF50249
SUPFAM:SSF81872	SUPFAM:SSF81878	UniParc:UPI000019C655	SEG:seg	:	:

Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]

Coordinates

chr5:-:234851..241106

Molecular Weight (calculated)

127262.0 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.373

Length

1155 amino acids

Sequence
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.