Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr8P26880_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 34.6 | 58.14 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 14.8 | 53.75 |
| CDY08306 | Canola | nucleus | 29.6 | 47.39 |
| Solyc02g050210.1.1 | Tomato | cytosol | 16.87 | 43.66 |
| KRH17731 | Soybean | mitochondrion | 41.78 | 36.16 |
| CDY64035 | Canola | nucleus | 39.06 | 33.93 |
| Bra005674.1-P | Field mustard | nucleus | 38.63 | 33.49 |
| AT5G01630.1 | Thale cress | nucleus | 41.78 | 33.25 |
| CDX80759 | Canola | nucleus | 38.63 | 32.07 |
| CDY11187 | Canola | nucleus | 39.93 | 31.67 |
| AT4G00020.2 | Thale cress | nucleus | 40.04 | 31.0 |
| Bra037060.1-P | Field mustard | nucleus | 38.3 | 30.4 |
| Solyc02g050200.1.1 | Tomato | nucleus | 25.46 | 29.55 |
| Zm00001d024953_P024 | Maize | nucleus | 45.27 | 26.96 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 45.81 | 26.6 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 46.14 | 26.08 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 46.03 | 25.98 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 46.46 | 25.54 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 6.75 | 12.89 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 6.96 | 7.68 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 6.53 | 6.82 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 6.42 | 6.81 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 5.98 | 5.95 |
Protein Annotations
| Gene3D:1.10.132.40 | MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | InterPro:BRCA2 | InterPro:BRCA2_OB_1 |
| InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G28060_001 |
| EnsemblPlants:GSMUA_Achr5P28060_001 | EnsemblPlants:GSMUA_Achr5T28060_001 | InterPro:IPR002093 | UniProt:M0T2D0 | InterPro:NA-bd_OB-fold | PFAM:PF00634 |
| PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 | PANTHER:PTHR11289 | SUPFAM:SSF50249 | SUPFAM:SSF81872 |
| SUPFAM:SSF81878 | UniParc:UPI0002969974 | : | : | : | : |
Description
Putative BRCA2 repeat family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G28060_001]
Coordinates
chr5:+:28415979..28422183
Molecular Weight (calculated)
102735.0 Da
IEP (calculated)
8.275
GRAVY (calculated)
-0.387
Length
919 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQETAGTSL LDCVDVNSVQ RSPENCINKF CSTGSYLTNG QLQKTLEHKL DSSDCGQSPV KFQTAGGRYV SISNDALKCA RNLLGESDIE ASENNITLDQ
101: PLSSLVSRTP PSLTKRRQFS LTRKIKSDSY TLDQENARSF AMENIYSGNK TPVNQKPEKD DLLSAGSAVE IVRRIENGDG MSLGGPLIDI SNIAGDCMNM
201: NRLPNEKRRP GKTSYVSPFK RPRSSRFITP LKGSTSLLAT GSSKPSTTES SNCGRISTRY PFQLKRKNLK DFFGGPPTCQ DLSGSLPHEV SNMDADNAVT
301: YRFYDAFHHD EIGLEAFQGM LLKSGASSSN ATKEWVANHY RWIVWKLASF ERCYSTQVGI KFLTVCNVLE ELKYRYEREV NYGHRSALKK ILDGDASPAS
401: MMVLCVSAIH STSRPTMLKA NDSNYPDEDI KKLYDSSSTV TKINCQTRIE LTDGWYSLDA LLDVWLSKQL AAGKLFVGQK LRICGAGLCG WVGPVSSLEA
501: SKTVHMLIHI NGTYRAQWDE KLGFCKYCIK ASGGKIPRTL VGITRVYPVL YKERFPDGAY VVRSERLEKK ALQIYNQRCS FILRCTIAEA IMSEQLDVFV
601: DINDGDEGAK LCKILETAAD PEVLMADMTS EQLFSFSTYQ AKQKEIRQSH LQKMIEKALK DAGVASREVT PFMRVRVAGL TSKYSCRKGR FREGLITIWS
701: PTEDQKVDLV EGKIYDVSGL MPLNFSMDVL YLQGGGYSTV WKNLPSTEAD KYEPFFNPRK SVNLSNLGEI PLASEFDIAA MILHVEDVCM SGRQKKQWIF
801: ITDGCNCSST SQYQEQHDCL LAVSFSSPMV DKDLFSHHHE GTVVGFYNLV KRARDQTNHL WVAEATENST YSVSYNLPGD CHLKVAATSA HRWAKLSYLT
901: IQKLKERISS ILGHHEISR
101: PLSSLVSRTP PSLTKRRQFS LTRKIKSDSY TLDQENARSF AMENIYSGNK TPVNQKPEKD DLLSAGSAVE IVRRIENGDG MSLGGPLIDI SNIAGDCMNM
201: NRLPNEKRRP GKTSYVSPFK RPRSSRFITP LKGSTSLLAT GSSKPSTTES SNCGRISTRY PFQLKRKNLK DFFGGPPTCQ DLSGSLPHEV SNMDADNAVT
301: YRFYDAFHHD EIGLEAFQGM LLKSGASSSN ATKEWVANHY RWIVWKLASF ERCYSTQVGI KFLTVCNVLE ELKYRYEREV NYGHRSALKK ILDGDASPAS
401: MMVLCVSAIH STSRPTMLKA NDSNYPDEDI KKLYDSSSTV TKINCQTRIE LTDGWYSLDA LLDVWLSKQL AAGKLFVGQK LRICGAGLCG WVGPVSSLEA
501: SKTVHMLIHI NGTYRAQWDE KLGFCKYCIK ASGGKIPRTL VGITRVYPVL YKERFPDGAY VVRSERLEKK ALQIYNQRCS FILRCTIAEA IMSEQLDVFV
601: DINDGDEGAK LCKILETAAD PEVLMADMTS EQLFSFSTYQ AKQKEIRQSH LQKMIEKALK DAGVASREVT PFMRVRVAGL TSKYSCRKGR FREGLITIWS
701: PTEDQKVDLV EGKIYDVSGL MPLNFSMDVL YLQGGGYSTV WKNLPSTEAD KYEPFFNPRK SVNLSNLGEI PLASEFDIAA MILHVEDVCM SGRQKKQWIF
801: ITDGCNCSST SQYQEQHDCL LAVSFSSPMV DKDLFSHHHE GTVVGFYNLV KRARDQTNHL WVAEATENST YSVSYNLPGD CHLKVAATSA HRWAKLSYLT
901: IQKLKERISS ILGHHEISR
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.