Factsheet for GSMUA_Achr10P18700_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P24600_001
GSMUA_Achr5P28060_001
GSMUA_Achr7P14570_001
GSMUA_Achr7P14620_001
GSMUA_Achr8P26880_001
GSMUA_Achr9P00140_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	GSMUA_Achr5P24600_001	AT3G19210.1	17227544
AT5G20850.1	GSMUA_Achr5P24600_001	AT3G19210.1	18430956
AT5G20850.1	GSMUA_Achr8P26880_001	AT3G22880.1	15014444
AT5G20850.1	GSMUA_Achr8P26880_001	AT3G22880.1	16415210
AT5G20850.1	GSMUA_Achr11P...	AT3G29350.1	17937504
AT5G20850.1	GSMUA_Achr7P14570_001	AT3G29350.1	17937504
AT5G20850.1	GSMUA_Achr7P14620_001	AT3G29350.1	17937504
AT5G20850.1	GSMUA_AchrUn_...	AT3G29350.1	17937504
AT5G20850.1	GSMUA_Achr9P00140_001	AT4G29170.1	17937504
AT5G20850.1	GSMUA_Achr5P28060_001	AT5G01630.1	15014444
AT5G20850.1	GSMUA_Achr5P28060_001	AT5G01630.1	16415210
AT5G20850.1	GSMUA_Achr10P...	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00340.t01	Wine grape	cytosol	86.61	28.78
CDX70947	Canola	cytosol	83.04	28.7
CDX88837	Canola	cytosol	83.04	28.7
GSMUA_Achr8P16810_001	Banana	cytosol	84.82	28.61
Os11t0615800-01	Rice	cytosol	86.61	28.61
Zm00001d041757_P001	Maize	cytosol	86.61	28.53
CDX92430	Canola	cytosol	81.25	28.53
CDY16571	Canola	cytosol	81.25	28.53
TraesCS7D01G381300.1	Wheat	cytosol	85.71	28.07
TraesCS7B01G287700.1	Wheat	cytosol	85.71	27.99
TraesCS7A01G384800.1	Wheat	cytosol	85.71	27.99
Os12t0497300-01	Rice	cytosol	84.82	27.86
AT5G20850.1	Thale cress	cytosol	84.82	27.78
Bra006580.1-P	Field mustard	cytosol	84.82	27.78
OQU83843	Sorghum	cytosol	85.71	27.51
Zm00001d021898_P001	Maize	cytosol	83.04	27.35
EER99597	Sorghum	cytosol	83.93	27.33
OQU79150	Sorghum	cytosol	85.71	27.27
Bra002334.1-P	Field mustard	cytosol	83.04	27.19
KRH02540	Soybean	cytosol	82.14	26.82
KRH19405	Soybean	cytosol	82.14	26.74
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	85.71	26.02
GSMUA_Achr8P26880_001	Banana	nucleus	50.89	14.77
GSMUA_Achr9P13630_001	Banana	cytosol	29.46	11.7
GSMUA_Achr5P14000_001	Banana	cytosol	24.11	9.18
GSMUA_Achr8P21040_001	Banana	nucleus	25.89	7.71
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	7.14	4.47

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302
GO:GO:0006355	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016787	GO:GO:0045003	EnsemblPlantsGene:GSMUA_Achr10G18700_001
EnsemblPlants:GSMUA_Achr10P18700_001	EnsemblPlants:GSMUA_Achr10T18700_001	InterPro:IPR020587	UniProt:M0RJE5	InterPro:P-loop_NTPase	PFAM:PF08423
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF52540	UniParc:UPI000295265C

Description

DNA repair protein RAD51 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G18700_001]

Coordinates

chr10:-:25310642..25312677

Molecular Weight (calculated)

12168.8 Da

IEP (calculated)

8.499

GRAVY (calculated)

0.038

Length

112 amino acids

Sequence
(BLAST)

001: MMVEARHVPS NLCNIYYLAK FLRSLQKLAD EFGVAVIITN QVVAQVDGSA MFAGPQIKPI GGNIMAHAST TRLALRKGRA EERICKVTSS PCLAEAESRF
101: QISSEGVTDV KD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.