Factsheet for VIT_11s0016g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00580.t01
VIT_05s0020g04170.t01
VIT_07s0104g00880.t01
VIT_08s0058g00500.t01
VIT_11s0016g00340.t01
VIT_11s0016g02770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	VIT_03s0063g00580.t01	AT3G19210.1	17227544
AT5G20850.1	VIT_03s0063g00580.t01	AT3G19210.1	18430956
AT5G20850.1	VIT_05s0020g04170.t01	AT3G22880.1	15014444
AT5G20850.1	VIT_05s0020g04170.t01	AT3G22880.1	16415210
AT5G20850.1	VIT_07s0104g00880.t01	AT3G29350.1	17937504
AT5G20850.1	VIT_11s0016g02770.t01	AT4G29170.1	17937504
AT5G20850.1	VIT_08s0058g00500.t01	AT5G01630.1	15014444
AT5G20850.1	VIT_08s0058g00500.t01	AT5G01630.1	16415210
AT5G20850.1	VIT_11s0016g00340.t01	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017540.2.1	Tomato	cytosol	92.88	91.52
Zm00001d041757_P001	Maize	cytosol	90.8	90.0
Os11t0615800-01	Rice	cytosol	90.21	89.68
Bra006580.1-P	Field mustard	cytosol	90.8	89.47
Bra002334.1-P	Field mustard	cytosol	90.5	89.18
AT5G20850.1	Thale cress	cytosol	90.21	88.89
Os12t0497300-01	Rice	cytosol	89.91	88.86
KRH02540	Soybean	cytosol	90.21	88.63
TraesCS7A01G384800.1	Wheat	cytosol	90.21	88.63
Zm00001d021898_P001	Maize	cytosol	89.32	88.53
CDX92430	Canola	cytosol	83.68	88.4
KRH19405	Soybean	cytosol	90.21	88.37
TraesCS7B01G287700.1	Wheat	cytosol	89.91	88.34
TraesCS7D01G381300.1	Wheat	cytosol	89.61	88.3
CDY16571	Canola	cytosol	83.09	87.77
CDX70947	Canola	cytosol	84.27	87.65
CDX88837	Canola	cytosol	84.27	87.65
EER99597	Sorghum	cytosol	89.32	87.5
OQU83843	Sorghum	cytosol	89.91	86.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.78	86.61
OQU79150	Sorghum	cytosol	89.91	86.08
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	89.32	81.57
VIT_05s0020g04170.t01	Wine grape	nucleus	49.85	48.28
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	25.82	29.0
VIT_15s0048g00380.t01	Wine grape	nucleus	28.19	27.46
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	23.44	21.29

Protein Annotations

Gene3D:1.10.150.20	EntrezGene:100252629	wikigene:100252629	MapMan:14.3.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:CBI27743	ProteinID:CBI27743.3	UniProt:D7TC85	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like
InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	EMBL:FN595756	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000724	GO:GO:0000730	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006312	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787
GO:GO:0042148	GO:GO:0070192	GO:GO:1990426	InterPro:IPR020587	InterPro:IPR020588	EntrezGene:LOC100252629
wikigene:LOC100252629	InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856	PFscan:PS50162
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGR:TC61592	TIGRFAMs:TIGR02239	UniParc:UPI000198421D
ArrayExpress:VIT_11s0016g00340	EnsemblPlantsGene:VIT_11s0016g00340	EnsemblPlants:VIT_11s0016g00340.t01	unigene:Vvi.23634	RefSeq:XP_002273803	RefSeq:XP_002273803.1

Description

DNA repair protein RAD51 homolog [Source:UniProtKB/TrEMBL;Acc:D7TC85]

Coordinates

chr11:+:343136..347907

Molecular Weight (calculated)

36592.0 Da

IEP (calculated)

6.112

GRAVY (calculated)

-0.120

Length

337 amino acids

Sequence
(BLAST)

001: MEQQKMAQAH EEVEDMQHGP FPVEHLQASG IASLDIKKLK DAGLCTVESV AYSPRKDLLQ IKGISEAKVD KIVEAASKLV PLGFTSASQL HAQRLEIIQI
101: TSGSRELDKI LEGGLETGSI TEIYGEFRSG KTQLCHTLCV TCQLPLDQGG GEGKAMYIDA EGTFRPQRLL QIADRFGLNG ADVLENVAYA RAYNTDHQSR
201: LLLEAASMMV ETRFALMIVD SATALYRTDF SGRGELSARQ MHLAKFLRSL QKLADEFGVA VVITNQVVAQ VDGSAIFAGP QIKPIGGNIM AHASTTRLAL
301: RKGRGEERIC KVISSPCLAE ADARFQISAE GVTDVKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.