Factsheet for Zm00001d021898_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d016055_P001
Zm00001d018151_P003
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	Zm00001d018151_P003	AT3G19210.1	17227544
AT5G20850.1	Zm00001d018151_P003	AT3G19210.1	18430956
AT5G20850.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d016055_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d035787_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d044629_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d050876_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT5G20850.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT5G20850.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT5G20850.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT5G20850.1	Zm00001d041757_P001	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99597	Sorghum	cytosol	97.65	96.51
Os11t0615800-01	Rice	cytosol	94.41	94.69
OQU83843	Sorghum	cytosol	96.76	94.27
Zm00001d041757_P001	Maize	cytosol	91.18	91.18
VIT_11s0016g00340.t01	Wine grape	cytosol	88.53	89.32
Solyc07g017540.2.1	Tomato	cytosol	87.65	87.13
AT5G20850.1	Thale cress	cytosol	85.88	85.38
Bra002334.1-P	Field mustard	cytosol	85.59	85.09
Bra006580.1-P	Field mustard	cytosol	85.59	85.09
CDX92430	Canola	cytosol	79.12	84.33
CDY16571	Canola	cytosol	78.53	83.7
CDX88837	Canola	cytosol	79.41	83.33
CDX70947	Canola	cytosol	79.41	83.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.35	83.04
Zm00001d006656_P001	Maize	cytosol	26.76	75.21
Zm00001d050876_P001	Maize	cytosol	11.18	45.78
Zm00001d044629_P001	Maize	nucleus	48.82	43.8
Zm00001d035787_P001	Maize	cytosol	18.24	37.58
Zm00001d016055_P001	Maize	plastid	27.65	34.18
Zm00001d044278_P001	Maize	cytosol	23.82	27.55
Zm00001d016839_P001	Maize	plastid	22.65	26.46
Zm00001d010986_P001	Maize	vacuole	25.88	24.58

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	EntrezGene:541709	InterPro:AAA+_ATPase	UniProt:B4FBZ5
EMBL:BT034633	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	EMBL:EU959747
GO:GO:0000150	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:1990426	InterPro:IPR020587
InterPro:IPR020588	ProteinID:ONM59022.1	InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856
PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd
InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI00017B645F
EnsemblPlantsGene:Zm00001d021898	EnsemblPlants:Zm00001d021898_P001	EnsemblPlants:Zm00001d021898_T001	SEG:seg	:	:

Description

recombination protein51 gene a recombination protein51 gene a

Coordinates

chr7:-:165620035..165624074

Molecular Weight (calculated)

36723.1 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.124

Length

340 amino acids

Sequence
(BLAST)

001: MSSAAQQQQK AAAAEQEEVE HGPFPIEQLQ ASGIAALDVK KLKDSGLHTV EAVAYTPRKD LLQIKGISEA KADKIIEAAS KIVPLGFTSA SQLHAQRLEI
101: IQVTTGSREL DKILEGGIET GSITEIYGEF RSGKTQLCHT LCVTCQLPLD QGGGEGKALY IDAEGTFRPQ RLLQIADRFG LNGADVLENV AYARAYNTDH
201: QSRLLLEAAS MMIETRFALM VVDSATALYR TDFSGRGELS ARQMHMAKFL RSLQKLADEF GVAVVITNQV VAQVDGSAMF AGPQFKPIGG NIMAHASTTR
301: LALRKGRGEE RICKVISSPC LAEAEARFQL ASEGIADVKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.