Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, nucleus
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98621 | Sorghum | cytosol | 76.83 | 96.14 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 72.59 | 90.82 |
| TraesCS5A01G174300.1 | Wheat | cytosol | 72.2 | 90.34 |
| TraesCS5D01G178900.1 | Wheat | cytosol | 72.2 | 90.34 |
| Os09t0280600-01 | Rice | nucleus | 71.04 | 88.89 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 61.39 | 82.81 |
| KRH74183 | Soybean | cytosol | 58.69 | 69.72 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 55.6 | 68.57 |
| AT4G29170.1 | Thale cress | cytosol | 57.53 | 64.78 |
| Solyc12g008680.1.1 | Tomato | cytosol | 59.85 | 64.05 |
| PGSC0003DMT400000930 | Potato | cytosol, golgi, nucleus | 59.85 | 62.75 |
| Bra024159.1-P | Field mustard | cytosol | 52.51 | 62.67 |
| CDX80742 | Canola | cytosol | 23.17 | 50.42 |
| CDY30231 | Canola | mitochondrion | 57.92 | 50.17 |
| CDY47782 | Canola | cytosol, golgi, mitochondrion, plastid | 57.53 | 44.48 |
Protein Annotations
| EntrezGene:103647183 | MapMan:13.3.6.4.5.1 | UniProt:A0A1D6EKJ5 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006302 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010212 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Mnd1 | ProteinID:ONM20421.1 | PFAM:PF03962 | PIRSF:PIRSF026991 | TMHMM:TMhelix |
| UniParc:UPI00084528FF | EnsemblPlantsGene:Zm00001d005140 | EnsemblPlants:Zm00001d005140_P003 | EnsemblPlants:Zm00001d005140_T003 | SEG:seg | : |
Description
Meiotic nuclear division protein 1 homolog
Coordinates
chr2:+:160691580..160697757
Molecular Weight (calculated)
29952.5 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.431
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKRGLSLE EKREQMLQIF YESQEFFLLK ELEKMGPKKG VISQSVKDVV QSLVDDDLVL KDKIGTSVSF YFSLYYCSMD QHFLLHITAA LLIACAANNY
101: ILLSITFSSS SQPQIVFLQV YFWSLPSCAG NQLRNTYNKL ESDLSNSRKR YMDLVEHRDN LKRGREDSEE REAALEELKT VELHHKKLKE ELAAYADSDP
201: AAVEAMKDAT DIAHSAANRW TDNIFTLQQW CSTTFPEAKE QLEHMYREVG ITEDFEYLQ
101: ILLSITFSSS SQPQIVFLQV YFWSLPSCAG NQLRNTYNKL ESDLSNSRKR YMDLVEHRDN LKRGREDSEE REAALEELKT VELHHKKLKE ELAAYADSDP
201: AAVEAMKDAT DIAHSAANRW TDNIFTLQQW CSTTFPEAKE QLEHMYREVG ITEDFEYLQ
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.