Factsheet for Solyc12g008680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g007330.1.1
Solyc05g009560.2.1
Solyc06g084410.2.1
Solyc07g017540.2.1
Solyc08g006980.2.1
Solyc08g077100.2.1
Solyc09g082790.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29170.1	Solyc05g009560.2.1	AT1G13330.1	16763194
AT4G29170.1	Solyc08g006980.2.1	AT1G32530.1	19187040
AT4G29170.1	Solyc08g077100.2.1	AT1G32530.1	19187040
AT4G29170.1	Solyc04g007330.1.1	AT1G67370.1	17937504
AT4G29170.1	Solyc09g082790.2.1	AT3G22880.1	17937504
AT4G29170.1	Solyc06g084410.2.1	AT3G29350.1	17937504
AT4G29170.1	Solyc12g008680.1.1	AT4G29170.1	17937504
AT4G29170.1	Solyc07g017540.2.1	AT5G20850.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000930	Potato	cytosol, golgi, nucleus	87.6	85.83
KRH74183	Soybean	cytosol	70.25	77.98
Os09t0280600-01	Rice	nucleus	66.53	77.78
GSMUA_Achr9P00140_001	Banana	cytosol	61.16	77.08
VIT_11s0016g02770.t01	Wine grape	cytosol	66.53	76.67
EER98621	Sorghum	cytosol	64.88	75.85
TraesCS5A01G174300.1	Wheat	cytosol	64.88	75.85
TraesCS5B01G171700.1	Wheat	nucleus	64.88	75.85
TraesCS5D01G178900.1	Wheat	cytosol	64.88	75.85
AT4G29170.1	Thale cress	cytosol	69.83	73.48
Bra024159.1-P	Field mustard	cytosol	65.7	73.27
Zm00001d005140_P003	Maize	golgi, mitochondrion, nucleus	64.05	59.85
CDX80742	Canola	cytosol	28.51	57.98
CDY30231	Canola	mitochondrion	70.66	57.19
CDY47782	Canola	cytosol, golgi, mitochondrion, plastid	71.49	51.64

Protein Annotations

MapMan:13.3.6.4.5.1	InterPro:AGP	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006302	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009555
GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
UniProt:K4DBV6	InterPro:Mnd1	PFAM:PF03962	PFAM:PF06376	PIRSF:PIRSF026991	PANTHER:PTHR33374
EnsemblPlantsGene:Solyc12g008680.1	EnsemblPlants:Solyc12g008680.1.1	TMHMM:TMhelix	UniParc:UPI000276957A	:	:

Description

Meiotic nuclear division protein 1 homolog [Source:Projected from Arabidopsis thaliana (AT4G29170) UniProtKB/Swiss-Prot;Acc:Q8GYD2]

Coordinates

chr12:+:2056414..2062039

Molecular Weight (calculated)

27624.0 Da

IEP (calculated)

5.429

GRAVY (calculated)

-0.471

Length

242 amino acids

Sequence
(BLAST)

001: MSKKRGLSLD EKREKMLQIF YDSQGFFLLK ELEKSGPKKG VISQSVKDVI QSLVDDDLVF KDKIGTSVYF WSLPSCAGNQ LRTVHRKLET DLQNNNKRHT
101: ELVEQCKALK KGREESDARE EALNELKAIE QKHKELKEEL MQYADNDPAT IEAMKKAIEV AHSAANRWTD NIFTLRQWCS NNFPQAKEQL DHLYNEVGIT
201: DDFDYLELPA MAPLAVTDGV AIDQGIAYVL MLVALAVTYM IH

Best Arabidopsis Sequence Match ( AT4G29170.1 )
(BLAST)

001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA

Arabidopsis Description

MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.