Factsheet for Solyc08g077100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g009560.2.1
Solyc08g006980.2.1
Solyc08g077100.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	Solyc05g009560.2.1	AT1G13330.1	19187040
AT1G32530.1	Solyc08g006980.2.1	AT1G32530.1	19187040
AT1G32530.1	Solyc08g077100.2.1	AT1G32530.1	19187040
AT1G32530.1	Solyc12g008680.1.1	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005352.1-P	Field mustard	nucleus	31.44	43.18
Solyc10g050590.1.1	Tomato	cytosol	4.26	35.29
Solyc09g074160.1.1	Tomato	cytosol	4.49	31.67
Os09t0371700-01	Rice	nucleus	15.37	30.52
CDY31680	Canola	mitochondrion, nucleus	38.06	28.4
CDX84219	Canola	mitochondrion, nucleus	38.53	27.53
KRH04325	Soybean	nucleus	43.26	26.95
VIT_02s0012g01020.t01	Wine grape	nucleus	45.86	26.83
KRH58212	Soybean	nucleus	43.26	25.52
Solyc08g006980.2.1	Tomato	nucleus	43.5	25.41
KRH28281	Soybean	nucleus, plastid	39.95	24.96
CDX93827	Canola	cytosol	39.95	24.6
Bra023274.1-P	Field mustard	nucleus	39.72	24.45
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	38.77	24.4
CDY01268	Canola	cytosol	39.24	24.16
Solyc08g016350.1.1	Tomato	extracellular	4.02	23.61
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	37.59	23.49
AT2G35330.1	Thale cress	endoplasmic reticulum	40.66	23.31
AT1G32530.1	Thale cress	cytosol	39.01	23.21
KXG35515	Sorghum	mitochondrion	34.75	22.83
Zm00001d020292_P001	Maize	mitochondrion, nucleus	33.57	22.15
TraesCS5A01G189000.1	Wheat	mitochondrion	33.57	21.55
TraesCS5D01G202000.1	Wheat	mitochondrion	33.57	21.55
TraesCS5B01G194700.1	Wheat	mitochondrion	33.33	21.4
HORVU5Hr1G058760.1	Barley	plastid	33.57	19.59
Solyc09g074140.1.1	Tomato	nucleus	19.62	15.23
Solyc09g074120.1.1	Tomato	nucleus	19.15	14.84
Solyc09g074150.1.1	Tomato	nucleus	12.77	13.27
Solyc01g080430.2.1	Tomato	nucleus	26.71	13.19
Solyc10g050610.1.1	Tomato	nucleus	9.22	12.26
Solyc09g074190.1.1	Tomato	nucleus	22.93	12.08
Solyc09g074130.1.1	Tomato	endoplasmic reticulum	19.62	11.93
Solyc09g074200.1.1	Tomato	nucleus	22.7	11.9
Solyc06g008900.2.1	Tomato	nucleus	22.46	11.28
Solyc09g074170.1.1	Tomato	cytosol	4.49	5.94
OQU93157	Sorghum	plastid	1.89	3.65
Solyc08g016370.1.1	Tomato	cytosol, extracellular, plasma membrane	0.71	2.5

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	InterPro:E3ligase_BOI_like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4CN70
PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF133	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc08g077100.2	EnsemblPlants:Solyc08g077100.2.1	UniParc:UPI000276C297	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:61026225..61028025

Molecular Weight (calculated)

48953.3 Da

IEP (calculated)

7.455

GRAVY (calculated)

-0.893

Length

423 amino acids

Sequence
(BLAST)

001: MEFGDHGSPN RFNLSPSKKT LLKRNIATFS AELRKYSEDC RNLSSEGISR SEGGVAKSDE SDIMENQNVV SSSSSKFHHL NFNENSMQVH GEMDEMNSSL
101: IHQTEELERQ VKERRDWAHQ KVMQAANKVS NDSIELRILR MNMEETRKLK NDKQLKEGSR LERLVYECEK MKTVVEKTSG LIDRGNLIKE KIEKENDELR
201: AEIEAYKLRA SEYEITQLEA LKKEKKCLKK LKVWEKQKKK LQDSIAAEKQ MIFDLKQQLV ESEKTEKEAE AMWKQEQRAK AEALSLLKEE TRLNEEVKAT
301: NKRMLMDMRL SSEIESQQYK DELERLHQEL SRLKASNEAP ERDIAKLLHE FDTLEVSSSK KDASNDRRCV ICKKGEVSVV FLPCAHQIIC ANCNDNYGNN
401: EQAKCPSCLV PIERRIRIFG AAS

Best Arabidopsis Sequence Match ( AT2G35330.2 )
(BLAST)

001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.