Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G007340.5 | |
| HORVU5Hr1G058760.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G32530.1 | HORVU4Hr1G007340.5 | AT1G13330.1 | 19187040 |
| AT1G32530.1 | HORVU5Hr1G058760.1 | AT1G32530.1 | 19187040 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 81.24 | 89.38 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 80.97 | 89.07 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 78.76 | 86.65 |
| Os09t0371700-01 | Rice | nucleus | 20.55 | 69.95 |
| KXG35515 | Sorghum | mitochondrion | 55.31 | 62.27 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 54.62 | 61.78 |
| OQU93157 | Sorghum | plastid | 14.07 | 46.58 |
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 37.24 | 40.18 |
| GSMUA_Achr7P04700_001 | Banana | mitochondrion, nucleus | 36.83 | 39.44 |
| Bra005352.1-P | Field mustard | nucleus | 16.14 | 37.99 |
| CDX84219 | Canola | mitochondrion, nucleus | 28.41 | 34.8 |
| CDY31680 | Canola | mitochondrion, nucleus | 26.76 | 34.22 |
| Solyc08g077100.2.1 | Tomato | nucleus | 19.59 | 33.57 |
| KRH04325 | Soybean | nucleus | 31.17 | 33.28 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 32.41 | 32.5 |
| PGSC0003DMT400052886 | Potato | nucleus | 32.41 | 32.5 |
| Solyc08g006980.2.1 | Tomato | nucleus | 32.14 | 32.18 |
| KRH58212 | Soybean | nucleus | 31.72 | 32.08 |
| CDX93827 | Canola | cytosol | 30.07 | 31.73 |
| Bra023274.1-P | Field mustard | nucleus | 30.07 | 31.73 |
| CDY01268 | Canola | cytosol | 29.38 | 31.0 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 31.17 | 30.62 |
| AT1G32530.1 | Thale cress | cytosol | 29.38 | 29.96 |
| KRH28281 | Soybean | nucleus, plastid | 27.31 | 29.25 |
| HORVU1Hr1G018310.1 | Barley | cytosol | 21.66 | 18.03 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G058760.1 | EnsemblPlantsGene:HORVU5Hr1G058760 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF165 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B47A4CF | UniProt:A0A287RDC9 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr5H:+:458364201..458368993
Molecular Weight (calculated)
80552.6 Da
IEP (calculated)
8.521
GRAVY (calculated)
-0.796
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: SPEAKPFPFV VSSSVTTPPQ TRSPFRHTHR RGIRLSAPPI HPNSDPIADR LRPVLKPPAA VAPPMAGQPR ERGSRAARKG RPVRTPATLL ALNPTPDPDL
101: SAQASDDVSP WGRSTADELE DRLLKRLEEA YAAALAGLAE LGYAEDAALR AVLRAGHCYG KLDDPVDNIV ANARSFLNDP DAPGGAGGFA DLRRLEEYSL
201: AGLVCLLQSS RPTISRVEAM WCLLANDLRL EQAINMGASF TDKSPHSGFS TAESDAPSPA APAPGQRGYC HFHATTSTEN HMFDPETFMR LAMRAHTDST
301: RPHTEGTAGV VSCVKNTWSR SGGSAAPAPA PAPAAPDGQP KQSFAMKVST DDLIESVVME LESLDIDKKD PPAEKPDPKN EMVRDLIKQT REMEEQLKER
401: KEWAQKKAVQ AARKLGNDLT ELRMLRMEHD DNQRRKNDKQ SLEDETMKRL TRLEYELKKK SGQLDRSNSS VQKLEMENAE IRAEMEAAKL SASETERQCQ
501: ILLKKEKKDS KKLELWERQK AKLHEEITEC KAKIAQADKE LTGVNKSIRN MEVKIREDTK VTEDNLALAE QERGKRESAK ADADRRLEEI RRKTEVESQC
601: YKDDLRRLQD QLSRLQKSMG ANGPTVPSAY PPAMTDRNTV RAPKQLNQKA PPTSNRQQEP IQNTGRRRGC MICKREEACV MLLQCAHQVL CVGCNKQHEE
701: KGAVRCPSCN AKIEERIRVF GASSN
101: SAQASDDVSP WGRSTADELE DRLLKRLEEA YAAALAGLAE LGYAEDAALR AVLRAGHCYG KLDDPVDNIV ANARSFLNDP DAPGGAGGFA DLRRLEEYSL
201: AGLVCLLQSS RPTISRVEAM WCLLANDLRL EQAINMGASF TDKSPHSGFS TAESDAPSPA APAPGQRGYC HFHATTSTEN HMFDPETFMR LAMRAHTDST
301: RPHTEGTAGV VSCVKNTWSR SGGSAAPAPA PAPAAPDGQP KQSFAMKVST DDLIESVVME LESLDIDKKD PPAEKPDPKN EMVRDLIKQT REMEEQLKER
401: KEWAQKKAVQ AARKLGNDLT ELRMLRMEHD DNQRRKNDKQ SLEDETMKRL TRLEYELKKK SGQLDRSNSS VQKLEMENAE IRAEMEAAKL SASETERQCQ
501: ILLKKEKKDS KKLELWERQK AKLHEEITEC KAKIAQADKE LTGVNKSIRN MEVKIREDTK VTEDNLALAE QERGKRESAK ADADRRLEEI RRKTEVESQC
601: YKDDLRRLQD QLSRLQKSMG ANGPTVPSAY PPAMTDRNTV RAPKQLNQKA PPTSNRQQEP IQNTGRRRGC MICKREEACV MLLQCAHQVL CVGCNKQHEE
701: KGAVRCPSCN AKIEERIRVF GASSN
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.