Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P24020_001 | Banana | mitochondrion, nucleus | 66.32 | 66.82 |
| Bra005352.1-P | Field mustard | nucleus | 22.75 | 50.0 |
| CDX84219 | Canola | mitochondrion, nucleus | 41.21 | 47.13 |
| KRH04325 | Soybean | nucleus | 46.97 | 46.83 |
| VIT_02s0012g01020.t01 | Wine grape | nucleus | 49.34 | 46.2 |
| KRH58212 | Soybean | nucleus | 47.71 | 45.05 |
| CDY31680 | Canola | mitochondrion, nucleus | 36.48 | 43.56 |
| KXG35515 | Sorghum | mitochondrion | 39.88 | 41.93 |
| Os09t0371700-01 | Rice | nucleus | 13.15 | 41.78 |
| Zm00001d020292_P001 | Maize | mitochondrion, nucleus | 38.55 | 40.72 |
| KRH28281 | Soybean | nucleus, plastid | 40.62 | 40.62 |
| TraesCS5D01G202000.1 | Wheat | mitochondrion | 39.44 | 40.52 |
| TraesCS5B01G194700.1 | Wheat | mitochondrion | 39.44 | 40.52 |
| TraesCS5A01G189000.1 | Wheat | mitochondrion | 39.29 | 40.36 |
| CDX93827 | Canola | cytosol | 40.77 | 40.17 |
| Bra023274.1-P | Field mustard | nucleus | 40.62 | 40.03 |
| CDY01268 | Canola | cytosol | 40.33 | 39.74 |
| AT2G35330.1 | Thale cress | endoplasmic reticulum | 42.98 | 39.43 |
| AT1G32530.1 | Thale cress | cytosol | 40.92 | 38.96 |
| PGSC0003DMT400052886 | Potato | nucleus | 40.47 | 37.9 |
| Solyc08g077100.2.1 | Tomato | nucleus | 23.49 | 37.59 |
| Solyc08g006980.2.1 | Tomato | nucleus | 39.59 | 37.02 |
| HORVU5Hr1G058760.1 | Barley | plastid | 39.44 | 36.83 |
| OQU93157 | Sorghum | plastid | 10.64 | 32.88 |
| GSMUA_Achr3P23730_001 | Banana | nucleus | 28.66 | 26.87 |
| GSMUA_Achr2P01510_001 | Banana | nucleus | 29.69 | 24.91 |
| GSMUA_Achr3P09160_001 | Banana | nucleus | 26.88 | 24.8 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P04700_001 | EnsemblPlants:GSMUA_Achr7T04700_001 | EnsemblPlantsGene:GSMUA_Achr7G04700_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF133 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000294D672 | UniProt:M0TER0 | MapMan:35.1 |
Description
Putative MND1-interacting protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04700_001]
Coordinates
chr7:-:3532106..3536771
Molecular Weight (calculated)
74300.4 Da
IEP (calculated)
7.824
GRAVY (calculated)
-0.598
Length
677 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNARDKSV RGGRKARRAP KHAPESAASA PAPSFPAHPA APSADPDPHH CSASPNPNPI PGGYDDDGGW GCCTEEQLEE LLLKNLDFFY REALARVVSM
101: GYDEEAALRA VLCNGRCYGS SDVVSNIVQN AVAHLTAPPP PPPRAAHQDP SAVAAVPGNG FADLRHLQEY SLAEMVCLLL QVRPNLTRGD AMWCLLMSDL
201: HVGRASTIEI PVPSAAAYPS TAPPLAPVAV PTTAGGAIGD NGNAADPIQP SMKPAPRRPA STFPTASGFR PFIKPPARPA ASDLASEDEQ LKEYIASARD
301: RVENGSLDTG VVNSVLKALE GMSLEDNGVE DPKKEMILDV IRQIRDLEAQ VKERQEWAQQ KALQAARKLS NDLTELKVLR MEREENQRLK NGKQALEDTT
401: MKRLSEMENA LKKVSGQVDR ANAVVRQLET ENAEIRAEIE ASKLSASESE RTCTEVARRE KKCLKKLVAW EKQREKMLGE ISSEKKKIVQ MQQQLDEVRA
501: ATKEYEMKWK QEIKAKEQAI VLAEEERQAK EAAKVNASRR HEALRRKIEI DYQRHKDDIQ RLEEELARLK ATAGSTVVIT PPANSLRTTN ADVKAPKETN
601: VKAPTGFSKP QDSSNKLNRC RACMICKKDE VSVVFLPCSH QVVCACCNED HEKKGKGSCP CCNVRIEERI RVYGASS
101: GYDEEAALRA VLCNGRCYGS SDVVSNIVQN AVAHLTAPPP PPPRAAHQDP SAVAAVPGNG FADLRHLQEY SLAEMVCLLL QVRPNLTRGD AMWCLLMSDL
201: HVGRASTIEI PVPSAAAYPS TAPPLAPVAV PTTAGGAIGD NGNAADPIQP SMKPAPRRPA STFPTASGFR PFIKPPARPA ASDLASEDEQ LKEYIASARD
301: RVENGSLDTG VVNSVLKALE GMSLEDNGVE DPKKEMILDV IRQIRDLEAQ VKERQEWAQQ KALQAARKLS NDLTELKVLR MEREENQRLK NGKQALEDTT
401: MKRLSEMENA LKKVSGQVDR ANAVVRQLET ENAEIRAEIE ASKLSASESE RTCTEVARRE KKCLKKLVAW EKQREKMLGE ISSEKKKIVQ MQQQLDEVRA
501: ATKEYEMKWK QEIKAKEQAI VLAEEERQAK EAAKVNASRR HEALRRKIEI DYQRHKDDIQ RLEEELARLK ATAGSTVVIT PPANSLRTTN ADVKAPKETN
601: VKAPTGFSKP QDSSNKLNRC RACMICKKDE VSVVFLPCSH QVVCACCNED HEKKGKGSCP CCNVRIEERI RVYGASS
001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.