Factsheet for GSMUA_Achr10P11280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P24020_001
GSMUA_Achr7P04700_001
GSMUA_Achr9P00140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	GSMUA_Achr1P24020_001	AT1G32530.1	19187040
AT1G13330.1	GSMUA_Achr7P04700_001	AT1G32530.1	19187040
AT1G13330.1	GSMUA_Achr9P00140_001	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G045000.1	Wheat	nucleus	76.99	76.65
TraesCS4A01G269200.1	Wheat	nucleus	76.99	76.65
EER91004	Sorghum	cytosol	76.11	75.77
TraesCS4D01G044700.1	Wheat	cytosol	76.11	75.77
Zm00001d013447_P001	Maize	cytosol	73.45	73.13
VIT_01s0011g03320.t01	Wine grape	cytosol	72.12	72.12
HORVU4Hr1G007340.5	Barley	nucleus	75.22	70.25
KRH45246	Soybean	cytosol	68.58	68.58
Zm00001d033716_P001	Maize	cytosol	66.37	68.18
AT1G13330.1	Thale cress	nucleus	68.14	68.14
Solyc05g009560.2.1	Tomato	cytosol	66.37	67.26
Bra019825.1-P	Field mustard	cytosol	66.37	66.37
CDX97992	Canola	cytosol	66.37	66.37
KRH75396	Soybean	cytosol	66.37	66.08
CDY19376	Canola	cytosol	65.93	65.93
PGSC0003DMT400033753	Potato	cytosol	38.5	62.14
CDY19381	Canola	endoplasmic reticulum	9.73	44.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.4.5.2	ncoils:Coil	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0051026	EnsemblPlantsGene:GSMUA_Achr10G11280_001	EnsemblPlants:GSMUA_Achr10P11280_001	EnsemblPlants:GSMUA_Achr10T11280_001	InterPro:Hop2	InterPro:IPR036388
UniProt:M0RHA4	PFAM:PF07106	PANTHER:PTHR15938	SUPFAM:SSF46785	UniParc:UPI0002949611	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

Homologous-pairing protein 2 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G11280_001]

Coordinates

chr10:+:20808737..20811915

Molecular Weight (calculated)

26021.0 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.879

Length

226 amino acids

Sequence
(BLAST)

001: MPPKSDSVEG IVLGFVNEQN RPLNSQNVAD ALQKYNLKKT AVQKALDTLA DNGQISYKEY GKQKIYLARQ DHFKIPNNQE LDQMKKDNSK LQDELGAQKK
101: TISEVEAEIR VLHSNLTLEE IRDKEAKLIG EVEEMEEKLS TLRSGVVLVK AEDKKVIEET YAEKINQWRK RKRIFKELWD AITENSPKDL KEFKEELGLE
201: YDEDVGVSLQ SCSELINPGK RRKTAR

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.