CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80742
CDX93827
CDY01268
CDY30231
CDY47782

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	CDX93827	AT1G32530.1	19187040
AT1G13330.1	CDY01268	AT1G32530.1	19187040
AT1G13330.1	CDX80742	AT4G29170.1	16763194
AT1G13330.1	CDY30231	AT4G29170.1	16763194
AT1G13330.1	CDY47782	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97992	Canola	cytosol	97.79	97.79
AT1G13330.1	Thale cress	nucleus	89.38	89.38
Solyc05g009560.2.1	Tomato	cytosol	74.78	75.78
KRH45246	Soybean	cytosol	73.45	73.45
KRH75396	Soybean	cytosol	71.24	70.93
VIT_01s0011g03320.t01	Wine grape	cytosol	70.35	70.35
PGSC0003DMT400033753	Potato	cytosol	42.92	69.29
EER91004	Sorghum	cytosol	69.47	69.16
TraesCS4B01G045000.1	Wheat	nucleus	67.26	66.96
Zm00001d013447_P001	Maize	cytosol	67.26	66.96
TraesCS4A01G269200.1	Wheat	nucleus	66.81	66.52
CDY19381	Canola	endoplasmic reticulum	14.6	66.0
GSMUA_Achr10P...	Banana	cytosol	65.93	65.93
TraesCS4D01G044700.1	Wheat	cytosol	65.93	65.64
Zm00001d033716_P001	Maize	cytosol	62.83	64.55
HORVU4Hr1G007340.5	Barley	nucleus	65.93	61.57

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.3.6.4.5.2	UniProt:A0A078G217	EnsemblPlants:CDY19376	ProteinID:CDY19376	ProteinID:CDY19376.1
ncoils:Coil	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00008913001	InterPro:Hop2
InterPro:IPR036388	PFAM:PF07106	PANTHER:PTHR15938	SUPFAM:SSF46785	UniParc:UPI0004EECABA	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

BnaC05g08850DBnaC05g08850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G217]

Coordinates

chrLK032095:-:414212..415479

Molecular Weight (calculated)

26334.3 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.961

Length

226 amino acids

Sequence
(BLAST)

001: MAPKTDNTEA IVLNFVNEQN RPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKLYIARQ DQFEIPNTEE LALMKEENAK LQEQVQEKRK
101: AISEVESEVK SLQSNLTLEE IQEKDAKLRK EVREMEEKLV KLREGVTLVR PEDKKAVEDM YSDKINQWRK RKRMFRDVWD TVTENFPRDI KEFKEELGVE
201: YDEDVGLSLQ AYSDLIPHGK KRGRGQ

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.