Factsheet for HORVU4Hr1G007340.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G058760.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	HORVU5Hr1G058760.1	AT1G32530.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G269200.1	Wheat	nucleus	89.67	95.59
TraesCS4B01G045000.1	Wheat	nucleus	89.26	95.15
TraesCS4D01G044700.1	Wheat	cytosol	88.43	94.27
EER91004	Sorghum	cytosol	79.75	85.02
Zm00001d013447_P001	Maize	cytosol	78.51	83.7
Zm00001d033716_P001	Maize	cytosol	71.9	79.09
GSMUA_Achr10P...	Banana	cytosol	70.25	75.22
Solyc05g009560.2.1	Tomato	cytosol	63.22	68.61
VIT_01s0011g03320.t01	Wine grape	cytosol	64.05	68.58
KRH45246	Soybean	cytosol	63.64	68.14
AT1G13330.1	Thale cress	nucleus	62.81	67.26
Bra019825.1-P	Field mustard	cytosol	62.4	66.81
CDX97992	Canola	cytosol	62.4	66.81
KRH75396	Soybean	cytosol	61.98	66.08
CDY19376	Canola	cytosol	61.57	65.93
PGSC0003DMT400033753	Potato	cytosol	35.95	62.14
CDY19381	Canola	endoplasmic reticulum	7.44	36.0

Protein Annotations

EnsemblPlants:HORVU4Hr1G007340.5	EnsemblPlantsGene:HORVU4Hr1G007340	Gene3D:1.10.10.10	GO:GO:0000003	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0007131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0051026	InterPro:Hop2	InterPro:IPR036388	InterPro:WH-like_DNA-bd_sf	ncoils:Coil	PANTHER:PTHR15938
PFAM:PF07106	SEG:seg	UniParc:UPI000B480366	UniProt:A0A287N397	MapMan:13.3.6.4.5.2	:

Description

No Description!

Coordinates

chrchr4H:+:19109043..19112664

Molecular Weight (calculated)

28190.6 Da

IEP (calculated)

9.795

GRAVY (calculated)

-1.074

Length

242 amino acids

Sequence
(BLAST)

001: RRRGSRRRQR RRGHGMPPKS DSVEGIVLNF VNEVNRPLNS QNVADALQKF SLKKTAVQKG LDALADSGQI SFKEYGKQKI YLARQDQFDI PNGEELEEMK
101: KANNKLQEEL AEQKKITSEV ESEIKGLQSN LTLEEIKSKE ARLQSEVQEM EEKLSKLQSG MILVKPEDKK IIEGSFSEKA NQWRKRKRMF KELWDNITEN
201: SPKDQKEFKE ELGLEYDEDV DVNFQPYSEM LVNLAKRRKV SR

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.