Factsheet for VIT_01s0011g03320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01020.t01
VIT_11s0016g02770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13330.1	VIT_02s0012g01020.t01	AT1G32530.1	19187040
AT1G13330.1	VIT_11s0016g02770.t01	AT4G29170.1	16763194

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45246	Soybean	cytosol	74.34	74.34
Solyc05g009560.2.1	Tomato	cytosol	73.01	73.99
KRH75396	Soybean	cytosol	73.01	72.69
GSMUA_Achr10P...	Banana	cytosol	72.12	72.12
AT1G13330.1	Thale cress	nucleus	71.68	71.68
CDY19376	Canola	cytosol	70.35	70.35
TraesCS4B01G045000.1	Wheat	nucleus	70.35	70.04
TraesCS4A01G269200.1	Wheat	nucleus	70.35	70.04
Bra019825.1-P	Field mustard	cytosol	69.91	69.91
CDX97992	Canola	cytosol	69.91	69.91
EER91004	Sorghum	cytosol	69.47	69.16
TraesCS4D01G044700.1	Wheat	cytosol	69.47	69.16
Zm00001d013447_P001	Maize	cytosol	68.58	68.28
PGSC0003DMT400033753	Potato	cytosol	42.04	67.86
HORVU4Hr1G007340.5	Barley	nucleus	68.58	64.05
Zm00001d033716_P001	Maize	cytosol	61.5	63.18
CDY19381	Canola	endoplasmic reticulum	10.18	46.0

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100257629	wikigene:100257629	MapMan:13.3.6.4.5.2	EMBL:AM472381	ProteinID:CAN68343
ProteinID:CAN68343.1	ProteinID:CBI27040	ProteinID:CBI27040.3	ncoils:Coil	UniProt:D7T969	EMBL:FN595752
GO:GO:0000003	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:Hop2	InterPro:IPR036388	EntrezGene:LOC100257629
wikigene:LOC100257629	PFAM:PF07106	PANTHER:PTHR15938	SUPFAM:SSF46785	UniParc:UPI00015C7D56	ArrayExpress:VIT_01s0011g03320
EnsemblPlantsGene:VIT_01s0011g03320	EnsemblPlants:VIT_01s0011g03320.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002279040	RefSeq:XP_002279040.1

Description

No Description!

Coordinates

chr1:+:3011621..3013806

Molecular Weight (calculated)

26428.5 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.910

Length

226 amino acids

Sequence
(BLAST)

001: MAPKSDSVEG IVLNFVNEQN RPLNSQNVAD SLQKFNLKKS SVQKALDALA DSGRISSKEY GKQKIYLARQ DQFDIPNSEE LSRMKEENAK LQQQLEEQKR
101: AISEVEGEIK TLQSNLTLEQ IRAKEAKLKM EVEEMEDKLN NLRGGVTLVK FEDRKVVEEM YSDRINQWRR RKRIFKDLWD AITENLPKDL KEFKEELAIE
201: YDEDVGVSFQ SLCDLMQHRK KRARCQ

Best Arabidopsis Sequence Match ( AT1G13330.1 )
(BLAST)

001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ

Arabidopsis Description

HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.