Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13330.1 | CDX93827 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | CDY01268 | AT1G32530.1 | 19187040 |
| AT1G13330.1 | CDX80742 | AT4G29170.1 | 16763194 |
| AT1G13330.1 | CDY30231 | AT4G29170.1 | 16763194 |
| AT1G13330.1 | CDY47782 | AT4G29170.1 | 16763194 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019825.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY19376 | Canola | cytosol | 97.79 | 97.79 |
| AT1G13330.1 | Thale cress | nucleus | 89.82 | 89.82 |
| Solyc05g009560.2.1 | Tomato | cytosol | 74.34 | 75.34 |
| KRH45246 | Soybean | cytosol | 73.01 | 73.01 |
| KRH75396 | Soybean | cytosol | 70.8 | 70.48 |
| VIT_01s0011g03320.t01 | Wine grape | cytosol | 69.91 | 69.91 |
| PGSC0003DMT400033753 | Potato | cytosol | 42.92 | 69.29 |
| EER91004 | Sorghum | cytosol | 68.14 | 67.84 |
| TraesCS4B01G045000.1 | Wheat | nucleus | 68.14 | 67.84 |
| TraesCS4A01G269200.1 | Wheat | nucleus | 67.7 | 67.4 |
| TraesCS4D01G044700.1 | Wheat | cytosol | 66.81 | 66.52 |
| GSMUA_Achr10P... | Banana | cytosol | 66.37 | 66.37 |
| CDY19381 | Canola | endoplasmic reticulum | 14.6 | 66.0 |
| Zm00001d013447_P001 | Maize | cytosol | 65.93 | 65.64 |
| Zm00001d033716_P001 | Maize | cytosol | 61.5 | 63.18 |
| HORVU4Hr1G007340.5 | Barley | nucleus | 66.81 | 62.4 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.3.6.4.5.2 | EnsemblPlants:CDX97992 | ProteinID:CDX97992 | ProteinID:CDX97992.1 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007049 | GO:GO:0007131 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00105349001 | InterPro:Hop2 | InterPro:IPR036388 |
| PFAM:PF07106 | PANTHER:PTHR15938 | SUPFAM:SSF46785 | UniParc:UPI000253EBEB | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
Description
BnaA06g07430D
Coordinates
chrLK031902:-:412834..414129
Molecular Weight (calculated)
26337.3 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.955
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKTDNTEA IVLNFVNEQN RPLNTQNAAD ALQKFSLKKT AVQKALDSLA DAGKITFKEY GKQKLYIARQ DQFEIPNTEE LALMKEENAK LQEQVQEKRK
101: TISEVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLI KLREGVTLVR PEDKKAVEDM YSDKINQWRK RKRMFRDVWD TVTENFPRDI KEFKEELGVE
201: YDEDVGLSLQ AYSDLIPHGK KRGRGQ
101: TISEVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLI KLREGVTLVR PEDKKAVEDM YSDKINQWRK RKRMFRDVWD TVTENFPRDI KEFKEELGVE
201: YDEDVGLSLQ AYSDLIPHGK KRGRGQ
001: MAPKSDNTEA IVLNFVNEQN KPLNTQNAAD ALQKFNLKKT AVQKALDSLA DAGKITFKEY GKQKIYIARQ DQFEIPNSEE LAQMKEDNAK LQEQLQEKKK
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
101: TISDVESEIK SLQSNLTLEE IQEKDAKLRK EVKEMEEKLV KLREGITLVR PEDKKAVEDM YADKINQWRK RKRMFRDIWD TVTENSPKDV KELKEELGIE
201: YDEDVGLSFQ AYADLIQHGK KRPRGQ
Arabidopsis Description
HOP2Homologous-pairing protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FX64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.