Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, golgi, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G29170.1 | Thale cress | cytosol | 60.9 | 88.7 |
| CDY30231 | Canola | mitochondrion | 71.34 | 79.93 |
| KRH74183 | Soybean | cytosol | 49.85 | 76.61 |
| Os09t0280600-01 | Rice | nucleus | 46.27 | 74.88 |
| EER98621 | Sorghum | cytosol | 45.97 | 74.4 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 46.57 | 74.29 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 42.09 | 73.44 |
| TraesCS5A01G174300.1 | Wheat | cytosol | 44.48 | 71.98 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 44.48 | 71.98 |
| TraesCS5D01G178900.1 | Wheat | cytosol | 44.48 | 71.98 |
| Solyc12g008680.1.1 | Tomato | cytosol | 51.64 | 71.49 |
| PGSC0003DMT400000930 | Potato | cytosol, golgi, nucleus | 51.34 | 69.64 |
| CDX80742 | Canola | cytosol | 23.58 | 66.39 |
| Zm00001d005140_P003 | Maize | golgi, mitochondrion, nucleus | 44.48 | 57.53 |
Protein Annotations
| EnsemblPlants:CDY47782 | EnsemblPlantsGene:GSBRNA2T00088083001 | InterPro:Mnd1 | ncoils:Coil | PFAM:PF03962 | ProteinID:CDY47782 |
| ProteinID:CDY47782.1 | SEG:seg | UniParc:UPI0004EE05A5 | UniProt:A0A078ICD0 | MapMan:13.3.6.4.5.1 | : |
Description
BnaC07g41780DBnaC07g41780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICD0]
Coordinates
chrLK032734:-:90643..93775
Molecular Weight (calculated)
38868.4 Da
IEP (calculated)
6.097
GRAVY (calculated)
-0.523
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVLNEKLFT IRGRPVRIDK QEQAMYIRIS MSKFKTLSGT YNNNCRRACY FINILLFPSH IFIIFCEGNK ARPTYLEASS TIFRERRERC KQESEIYPFV
101: DFIMSKKRGL SLEEKREKML QIFYDSQDFF LLKELEKLGP KKGVISQSVK DVIQSLVDDD LVAKDKIGIS VYFWSLPSCA GNQLRSVRQK LESDLQGSNK
201: KLAELVDQCD ALKKGREESE ERTEALAQLQ DIEKKHKELK NEMVQFADND PATLEAMRAA IEVAHQSANR WTDNIFTLRQ WCSNNFPQAK EQLEHLYTEA
301: GITEDFDYLE LSSFPVISSS HDPETPKQLL VEDQA
101: DFIMSKKRGL SLEEKREKML QIFYDSQDFF LLKELEKLGP KKGVISQSVK DVIQSLVDDD LVAKDKIGIS VYFWSLPSCA GNQLRSVRQK LESDLQGSNK
201: KLAELVDQCD ALKKGREESE ERTEALAQLQ DIEKKHKELK NEMVQFADND PATLEAMRAA IEVAHQSANR WTDNIFTLRQ WCSNNFPQAK EQLEHLYTEA
301: GITEDFDYLE LSSFPVISSS HDPETPKQLL VEDQA
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.