CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70947
CDX80742
CDX80759
CDX85268
CDX86370
CDX88837
CDX92308
CDX92430
CDX99258
CDY00096
CDY11187
CDY16571
CDY19992
CDY30231
CDY34225
CDY46610
CDY47782

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	CDX92308	AT3G19210.1	17227544
AT5G20850.1	CDX99258	AT3G19210.1	17227544
AT5G20850.1	CDX92308	AT3G19210.1	18430956
AT5G20850.1	CDX99258	AT3G19210.1	18430956
AT5G20850.1	CDY34225	AT3G22880.1	15014444
AT5G20850.1	CDY46610	AT3G22880.1	15014444
AT5G20850.1	CDY34225	AT3G22880.1	16415210
AT5G20850.1	CDY46610	AT3G22880.1	16415210
AT5G20850.1	CDX85268	AT3G29350.1	17937504
AT5G20850.1	CDX86370	AT3G29350.1	17937504
AT5G20850.1	CDY00096	AT3G29350.1	17937504
AT5G20850.1	CDY19992	AT3G29350.1	17937504
AT5G20850.1	CDX80742	AT4G29170.1	17937504
AT5G20850.1	CDY30231	AT4G29170.1	17937504
AT5G20850.1	CDY47782	AT4G29170.1	17937504
AT5G20850.1	CDX80759	AT5G01630.1	15014444
AT5G20850.1	CDY11187	AT5G01630.1	15014444
AT5G20850.1	CDX80759	AT5G01630.1	16415210
AT5G20850.1	CDY11187	AT5G01630.1	16415210
AT5G20850.1	CDX70947	AT5G20850.1	15014444
AT5G20850.1	CDX88837	AT5G20850.1	15014444
AT5G20850.1	CDX92430	AT5G20850.1	15014444
AT5G20850.1	CDY16571	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88837	Canola	cytosol	100.0	100.0
CDX92430	Canola	cytosol	96.91	98.43
CDY16571	Canola	cytosol	96.3	97.81
Bra006580.1-P	Field mustard	cytosol	98.15	92.98
AT5G20850.1	Thale cress	cytosol	97.22	92.11
VIT_11s0016g00340.t01	Wine grape	cytosol	87.65	84.27
Solyc07g017540.2.1	Tomato	cytosol	88.58	83.92
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.7	83.04
KRH02540	Soybean	cytosol	86.42	81.63
KRH19405	Soybean	cytosol	86.42	81.4
Zm00001d041757_P001	Maize	cytosol	84.88	80.88
TraesCS7D01G381300.1	Wheat	cytosol	84.88	80.41
Os11t0615800-01	Rice	cytosol	83.95	80.24
TraesCS7A01G384800.1	Wheat	cytosol	84.57	79.88
Os12t0497300-01	Rice	cytosol	83.95	79.77
TraesCS7B01G287700.1	Wheat	cytosol	84.26	79.59
Zm00001d021898_P001	Maize	cytosol	83.33	79.41
EER99597	Sorghum	cytosol	83.64	78.78
OQU83843	Sorghum	cytosol	83.64	77.65
OQU79150	Sorghum	cytosol	83.64	76.99
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	83.64	73.44
CDX92963	Canola	nucleus	12.04	46.43
CDY46610	Canola	nucleus	47.22	46.08
CDY34225	Canola	mitochondrion	47.84	41.11
CDY68195	Canola	cytosol, nucleus, plastid	25.31	26.97
CDY18933	Canola	plastid	27.47	25.65
CDX74725	Canola	nucleus	28.4	22.77
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	20.68	21.9
CDY11869	Canola	cytosol	15.12	21.3
CDY53383	Canola	cytosol	25.31	17.86
CDX77188	Canola	cytosol	25.0	17.65

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	GO:A0A078C2J3	InterPro:AAA+_ATPase	EnsemblPlants:CDX70947
ProteinID:CDX70947	ProteinID:CDX70947.1	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000150
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:1990426	EnsemblPlantsGene:GSBRNA2T00140863001	InterPro:IPR020587
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382
SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI0004EEBA64	:	:	:

Description

BnaC03g10310D

Coordinates

chrLK031791:-:2896003..2898298

Molecular Weight (calculated)

35373.3 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.254

Length

324 amino acids

Sequence
(BLAST)

001: MTTMEQRRNQ NTVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGLTKSLK QASSKLVPLG FTSASQLHAQ RQEIIQITSG SRELDKVLEG
101: GIETGSITEL YGEFRSGKTQ LCHTLCVTCQ LPMDQGGGEG KAMYIDAEGT FRPQRLLQIA DRFGLNGADV LENVAYARAY NTDHQSRLLL EAASMMVETR
201: FALMIVDSAT ALYRTDFSGR GELSARQMHL AKFLRSLQKL ADEFGVAVVI TNQVVAQVDG SALFAGPQFK PIGGNIMAHA TTTRLALRKG RAEERICKVI
301: SSPCLPEAEA RFQISTEGVT DCKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.