CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004897.1-P	Field mustard	nucleus	91.58	100.0
CDY68195	Canola	cytosol, nucleus, plastid	74.26	98.68
CDY18933	Canola	plastid	84.65	98.56
AT2G45280.2	Thale cress	nucleus, plastid	80.45	83.98
Solyc05g050960.2.1	Tomato	cytosol	40.84	77.46
VIT_15s0048g00380.t01	Wine grape	nucleus	62.62	73.12
KRH65320	Soybean	mitochondrion, nucleus	61.14	71.18
PGSC0003DMT400018063	Potato	nucleus	63.86	70.68
GSMUA_Achr5P14000_001	Banana	cytosol	48.02	65.99
Solyc05g050950.2.1	Tomato	plastid	20.05	65.85
TraesCS2D01G214900.1	Wheat	cytosol	46.78	65.17
KXG31586	Sorghum	cytosol	45.05	64.54
TraesCS2A01G208200.1	Wheat	cytosol	46.29	64.48
Zm00001d044278_P001	Maize	cytosol	46.53	63.95
Os01t0578000-01	Rice	cytosol	53.47	61.89
TraesCS2B01G234700.3	Wheat	cytosol	46.53	59.49
HORVU0Hr1G003380.15	Barley	cytosol	26.73	44.08
CDX92963	Canola	nucleus	7.43	35.71
CDY46610	Canola	nucleus	23.51	28.61
CDY16571	Canola	cytosol	22.52	28.53
CDX92430	Canola	cytosol	22.52	28.53
CDX88837	Canola	cytosol	22.77	28.4
CDX70947	Canola	cytosol	22.77	28.4
CDY34225	Canola	mitochondrion	23.51	25.2
CDY11869	Canola	cytosol	12.13	21.3
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	15.59	20.59
CDY53383	Canola	cytosol	19.55	17.21
CDX77188	Canola	cytosol	19.55	17.21

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	GO:A0A078CD35	EnsemblPlants:CDX74725	ProteinID:CDX74725	ProteinID:CDX74725.1
InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00116687001	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0004EE764D
SEG:seg	:	:	:	:	:

Description

BnaA05g04710D

Coordinates

chrLK031802:+:332563..334930

Molecular Weight (calculated)

45172.9 Da

IEP (calculated)

7.528

GRAVY (calculated)

-0.264

Length

404 amino acids

Sequence
(BLAST)

001: MVTWTGLEHF RVGRFNPPPP AIEADDFVYD LRPRWPRGEE RGKSPAIEES FHSRRTFMET WRLPLSSSIR GKLISAGYTS LSSISSVSST DLARDVKITE
101: SEAFEILKMA NQVTGSSSCN GRSSSLVNGA RNAWDMLHEE EALPRITTSC SDLDKILGGG ISCRDVTEIG GVPGIGKTQI GIQLSVNVQI PREFGGLGGK
201: AIYIDTEGSF MVERALQIAE ACVEDMEEYT GYMHKHFKAS QVQMKPRDIL ENIFYFRVCS YTEQIALVNH LDKFISENKD VKVVIVDSIT FHFRQDFDDL
301: AQRTRVLSEM ALKFMKLAKK FSLAVVLLNQ VTTKYTEGSF QLALALGDSW SHSCTNRVIL YWNGDERYAY IDKSPSLPSA SASYTVTGRG LRNSSSSSKR
401: VKMM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.