Factsheet for GSMUA_Achr5P14000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31586	Sorghum	cytosol	68.37	71.28
TraesCS2D01G214900.1	Wheat	cytosol	69.73	70.69
TraesCS2A01G208200.1	Wheat	cytosol	69.39	70.34
Solyc05g050960.2.1	Tomato	cytosol	49.66	68.54
Zm00001d044278_P001	Maize	cytosol	67.69	67.69
TraesCS2B01G234700.3	Wheat	cytosol	69.39	64.56
CDY68195	Canola	cytosol, nucleus, plastid	64.29	62.17
VIT_15s0048g00380.t01	Wine grape	nucleus	71.09	60.4
KRH65320	Soybean	mitochondrion, nucleus	69.39	58.79
Os01t0578000-01	Rice	cytosol	69.73	58.74
CDY18933	Canola	plastid	65.65	55.62
PGSC0003DMT400018063	Potato	nucleus	68.03	54.79
Bra004897.1-P	Field mustard	nucleus	65.99	52.43
AT2G45280.2	Thale cress	nucleus, plastid	66.33	50.39
HORVU0Hr1G003380.15	Barley	cytosol	40.82	48.98
CDX74725	Canola	nucleus	65.99	48.02
Solyc05g050950.2.1	Tomato	plastid	14.97	35.77
GSMUA_Achr9P13630_001	Banana	cytosol	23.47	24.47
GSMUA_Achr8P16810_001	Banana	cytosol	27.55	24.4
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	9.18	24.11
GSMUA_Achr8P26880_001	Banana	nucleus	29.59	22.54
GSMUA_Achr8P21040_001	Banana	nucleus	24.49	19.15
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	6.8	11.17

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007140	GO:GO:0007141	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003
GO:GO:0051321	EnsemblPlantsGene:GSMUA_Achr5G14000_001	EnsemblPlants:GSMUA_Achr5P14000_001	EnsemblPlants:GSMUA_Achr5T14000_001	InterPro:IPR020588	UniProt:M0SYC9
InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0002952BDB	:	:

Description

DNA repair protein RAD51 homolog 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14000_001]

Coordinates

chr5:-:10067125..10071211

Molecular Weight (calculated)

32663.5 Da

IEP (calculated)

7.261

GRAVY (calculated)

-0.064

Length

294 amino acids

Sequence
(BLAST)

001: MSETSRFRSL EGGHGALKGA QTAWDMLSEE QMQKHITTGC EELDAILGGG IHCKEVTEVG GVPGIGKTQL GIQLAVNVQI PVECGGLGGK AIYIDTEGSF
101: MVERAHQIAE GCISDLLDNT AHRLKDFPAC PEILQPNSFL ANIFYFRICS YTEQIATINY LEKFLEEQKD VKIIVVDSIT FHFRQDFDDL ALRTRVLGGM
201: SLKLMRFAKK YSLAVVLLNQ VTTKFVEGSF HLTLALGDTW SHACTNRIIL YWNGNDRHAY IDKSPSLRSA TAPFLITGKG IRNATSHCKR VRMM

Best Arabidopsis Sequence Match ( AT2G45280.2 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.