Factsheet for GSMUA_Achr8P16810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017540.2.1	Tomato	cytosol	90.66	88.01
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.61	84.82
KRH19405	Soybean	cytosol	87.65	84.59
KRH02540	Soybean	cytosol	87.05	84.26
GSMUA_Achr8P26880_001	Banana	nucleus	52.11	44.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	23.8	44.13
GSMUA_Achr9P13630_001	Banana	cytosol	25.0	29.43
GSMUA_Achr5P14000_001	Banana	cytosol	24.4	27.55
GSMUA_Achr8P21040_001	Banana	nucleus	24.4	21.54

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000150	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:1990426	EnsemblPlantsGene:GSMUA_Achr8G16810_001	EnsemblPlants:GSMUA_Achr8P16810_001	EnsemblPlants:GSMUA_Achr8T16810_001	InterPro:IPR020587	InterPro:IPR020588
UniProt:M0TR34	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382
SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI0002966C6C	:	:

Description

DNA repair protein RAD51 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr8G16810_001]

Coordinates

chr8:-:14883485..14886764

Molecular Weight (calculated)

36075.5 Da

IEP (calculated)

6.112

GRAVY (calculated)

-0.114

Length

332 amino acids

Sequence
(BLAST)

001: MAAAAQRHQK MAEDQDEAED IQHGPFPIEH LQTSGIAAID VKKLKDAGLC TVESVVYSPR KDLLQIKGIS EAKVDKIIEA GIASQLHAQR LEIIQITSGA
101: RELDKILEGG IETGSITEIY GEFRCGKTQL CHTLCVTCQL PLDQGGGEGK ALYIDAEGTF RPQRLLQIAE RFGLNGADVL ENVAYARAYN TDHQSRLLLE
201: AASMMVRQFA LMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA IFAGPQIKPI GGNIMAHAST TRLALRKGRG
301: EERICKVISS PCLAEAEARF QISPEGVTDV KD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.