Factsheet for GSMUA_Achr8P26880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P28060_001
GSMUA_Achr7P14570_001
GSMUA_Achr7P14620_001
GSMUA_Achr8P26880_001
GSMUA_Achr9P00140_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	GSMUA_Achr10P...	AT1G67370.1	17937504
AT3G22880.1	GSMUA_Achr8P26880_001	AT3G22880.1	15014444
AT3G22880.1	GSMUA_Achr11P...	AT3G29350.1	17937504
AT3G22880.1	GSMUA_Achr7P14570_001	AT3G29350.1	17937504
AT3G22880.1	GSMUA_Achr7P14620_001	AT3G29350.1	17937504
AT3G22880.1	GSMUA_AchrUn_...	AT3G29350.1	17937504
AT3G22880.1	GSMUA_Achr9P00140_001	AT4G29170.1	17937504
AT3G22880.1	GSMUA_Achr5P28060_001	AT5G01630.1	15014444
AT3G22880.1	GSMUA_Achr5P28060_001	AT5G01630.1	16415210
AT3G22880.1	GSMUA_Achr10P...	AT5G20850.1	15014444
AT3G22880.1	GSMUA_Achr10P...	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g04170.t01	Wine grape	nucleus	78.76	87.36
OQU84696	Sorghum	nucleus	77.72	87.21
Os11t0146800-01	Rice	nucleus	77.46	86.92
Solyc09g082790.2.1	Tomato	nucleus	75.13	86.83
TraesCS5D01G141200.1	Wheat	nucleus	77.2	86.63
TraesCS5B01G131900.1	Wheat	nucleus	76.68	86.05
Os12t0143800-01	Rice	mitochondrion	76.68	86.05
OQU78622	Sorghum	nucleus	74.87	86.01
CDY46610	Canola	nucleus	73.32	85.24
KRH35438	Soybean	nucleus	76.17	85.22
HORVU5Hr1G040730.2	Barley	nucleus	75.91	84.68
Bra023796.1-P	Field mustard	nucleus	72.8	84.64
AT3G22880.1	Thale cress	nucleus	74.87	84.01
TraesCS5A01G133000.1	Wheat	nucleus	75.13	83.81
PGSC0003DMT400077570	Potato	nucleus	73.06	82.7
Zm00001d050876_P001	Maize	cytosol	16.84	78.31
Zm00001d044629_P001	Maize	nucleus	76.17	77.57
KRG91377	Soybean	cytosol	28.24	75.17
CDY34225	Canola	mitochondrion	72.54	74.27
CDX92963	Canola	nucleus	15.54	71.43
Bra001890.1-P	Field mustard	nucleus	15.54	71.43
Zm00001d035787_P001	Maize	cytosol	28.24	66.06
Zm00001d016055_P001	Maize	plastid	40.16	56.36
GSMUA_Achr8P16810_001	Banana	cytosol	44.82	52.11
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	14.77	50.89
GSMUA_Achr5P14000_001	Banana	cytosol	22.54	29.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	12.44	26.82
GSMUA_Achr9P13630_001	Banana	cytosol	18.39	25.18
GSMUA_Achr8P21040_001	Banana	nucleus	20.47	21.01

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0051026	EnsemblPlantsGene:GSMUA_Achr8G26880_001	EnsemblPlants:GSMUA_Achr8P26880_001	EnsemblPlants:GSMUA_Achr8T26880_001
InterPro:IPR020587	InterPro:IPR020588	UniProt:M0TTZ1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd
InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238	TMHMM:TMhelix	UniParc:UPI00029682B2
SEG:seg	:	:	:	:	:

Description

Meiotic recombination protein DMC1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr8G26880_001]

Coordinates

chr8:-:30239189..30241901

Molecular Weight (calculated)

42996.2 Da

IEP (calculated)

5.455

GRAVY (calculated)

0.006

Length

386 amino acids

Sequence
(BLAST)

001: MAPRFEEQGQ LQLLEREEDE EDDCFEPIDK LIVQGINAGD IKKLQDAGIY TCNGLMMHTK KSLTGIKGLS EAKVDKICEA AEKLVNMGYV TGSDLLLRRK
101: AVVRISTGSQ ALDELLGGGI ETLSITEAFG EFRSGKTQLA HTLCVSTQLP IQMHGGNGKV AYIDTEGTFR PDRIVPIAER FGMDAGAVLD NIIYARAYTY
201: EHQYNLLLGL AAKMSEEPFR LLIVDSVIAL FRVDFSGRGE LAERQQKLAQ MLSRLIKIAE EFNVAVYITN QVIADPGGGM FISDPKKPAG GHVLAHSATI
301: RLMLRKGKGE QRVCKIYDAP NLPEAEAISL NSSHIYIYIY IYIYIYIYIY IYIYNHIIFV IFILLNLDQG DHVFQITPGG ITDVKD

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.