Factsheet for Zm00001d016055_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d006089_P002
Zm00001d016055_P001
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Zm00001d006089_P002	AT1G67370.1	17937504
AT3G22880.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	16415210
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001890.1-P	Field mustard	nucleus	23.27	76.19
CDX92963	Canola	nucleus	23.27	76.19
OQU84696	Sorghum	nucleus	61.09	48.84
Os11t0146800-01	Rice	nucleus	60.0	47.97
TraesCS5D01G141200.1	Wheat	nucleus	59.27	47.38
HORVU5Hr1G040730.2	Barley	nucleus	59.27	47.11
TraesCS5B01G131900.1	Wheat	nucleus	58.91	47.09
Os12t0143800-01	Rice	mitochondrion	58.91	47.09
TraesCS5A01G133000.1	Wheat	nucleus	58.91	46.82
Bra023796.1-P	Field mustard	nucleus	55.27	45.78
CDY46610	Canola	nucleus	55.27	45.78
Solyc09g082790.2.1	Tomato	nucleus	55.27	45.51
Zm00001d044629_P001	Maize	nucleus	61.82	44.85
KRH35438	Soybean	nucleus	55.64	44.35
PGSC0003DMT400077570	Potato	nucleus	54.91	44.28
VIT_05s0020g04170.t01	Wine grape	nucleus	56.0	44.25
AT3G22880.1	Thale cress	nucleus	54.55	43.6
CDY34225	Canola	mitochondrion	55.27	40.32
GSMUA_Achr8P26880_001	Banana	nucleus	56.36	40.16
KRG91377	Soybean	cytosol	15.64	29.66
Zm00001d041757_P001	Maize	cytosol	35.64	28.82
Zm00001d021898_P001	Maize	cytosol	34.18	27.65
Zm00001d044278_P001	Maize	cytosol	16.73	15.65
Zm00001d010986_P001	Maize	vacuole	16.36	12.57
Zm00001d016839_P001	Maize	plastid	13.09	12.37
Zm00001d050876_P001	Maize	cytosol	3.64	12.05
Zm00001d035787_P001	Maize	cytosol	5.45	9.09
Zm00001d006656_P001	Maize	cytosol	3.64	8.26

Protein Annotations

Gene3D:1.10.150.20	MapMan:35.1	UniProt:A0A1D6H580	ProteinID:AQK69980.1	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30
InterPro:RecA_ATP-bd	SUPFAM:SSF47794	SUPFAM:SSF52540	UniParc:UPI0008449DF3	EnsemblPlantsGene:Zm00001d016055	EnsemblPlants:Zm00001d016055_P001
EnsemblPlants:Zm00001d016055_T001	SEG:seg	:	:	:	:

Description

Meiotic recombination protein DMC1 homolog

Coordinates

chr5:-:141778289..141782493

Molecular Weight (calculated)

30243.6 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.092

Length

275 amino acids

Sequence
(BLAST)

001: MDALAPRSRA RPPPPSPTGI TTPPPSPSPW QSRIGACPSP VENLTGIKGL SEAKVDKICE AAEKLLNQGF MTGNDLLLKR KSVVRITIGS QALDELLGGG
101: IETLCITEAF GEFRSGKTQL AHTLCVSTQL PIHMHGGNGK VAYIDTEGTL YLWELFVKLI LKSLYLFLSS PNCFLNEVFS RPERIVPIAE RFGMDANAVL
201: DNIIYARAYT YEHQYNLLLG LAAKMAEEPF KWGGARLDVP PGRWLTGSFN LTSRFRTNIF FFTGKSGSKN CAFSR

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.