Factsheet for Zm00001d035787_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d006089_P002
Zm00001d016055_P001
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Zm00001d006089_P002	AT1G67370.1	17937504
AT3G22880.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	16415210
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050876_P001	Maize	cytosol	40.0	79.52
KRG91377	Soybean	cytosol	32.73	37.24
Zm00001d006656_P001	Maize	cytosol	24.85	33.88
OQU78622	Sorghum	nucleus	67.27	33.04
TraesCS5D01G141200.1	Wheat	nucleus	67.88	32.56
Os11t0146800-01	Rice	nucleus	67.88	32.56
TraesCS5A01G133000.1	Wheat	nucleus	67.88	32.37
HORVU5Hr1G040730.2	Barley	nucleus	67.88	32.37
TraesCS5B01G131900.1	Wheat	nucleus	67.27	32.27
Os12t0143800-01	Rice	mitochondrion	67.27	32.27
Zm00001d044629_P001	Maize	nucleus	73.33	31.93
Solyc09g082790.2.1	Tomato	nucleus	63.03	31.14
VIT_05s0020g04170.t01	Wine grape	nucleus	65.45	31.03
CDY46610	Canola	nucleus	60.0	29.82
Bra023796.1-P	Field mustard	nucleus	60.0	29.82
KRH35438	Soybean	nucleus	61.21	29.28
GSMUA_Achr8P26880_001	Banana	nucleus	66.06	28.24
AT3G22880.1	Thale cress	nucleus	58.79	28.2
PGSC0003DMT400077570	Potato	nucleus	56.97	27.57
CDY34225	Canola	mitochondrion	60.0	26.26
Zm00001d021898_P001	Maize	cytosol	37.58	18.24
Zm00001d041757_P001	Maize	cytosol	36.97	17.94
Zm00001d044278_P001	Maize	cytosol	21.82	12.24
Zm00001d016839_P001	Maize	plastid	20.61	11.68
Zm00001d010986_P001	Maize	vacuole	23.64	10.89
Zm00001d016055_P001	Maize	plastid	9.09	5.45
CDX92963	Canola	nucleus	0.61	1.19
Bra001890.1-P	Field mustard	nucleus	0.61	1.19

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6LIT8	ProteinID:AQK79698.1	ncoils:Coil	InterPro:DNA_recomb/repair_Rad51_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020587	InterPro:IPR020588
InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30
InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF52540	UniParc:UPI0008434AB1	EnsemblPlantsGene:Zm00001d035787	EnsemblPlants:Zm00001d035787_P001
EnsemblPlants:Zm00001d035787_T001	:	:	:	:	:

Description

Meiotic recombination protein DMC1 homolog

Coordinates

chr6:+:48971439..48972583

Molecular Weight (calculated)

18085.1 Da

IEP (calculated)

7.775

GRAVY (calculated)

0.108

Length

165 amino acids

Sequence
(BLAST)

001: MAEEPFKLLK QIVDSVIALF RVDFSGRGEL AEHQQKLAQM LSRLTKIAKE FNVVVYFTNQ VIADPGGGMF ITDPKKPAGG HVLAHAATIR LMLRKGKGEQ
101: CVCKIFDAPN LPEGEAISFL LCLSMFTACA NGRLTFTACH NLARFPCIPN STDSEPFLLS ANCHD

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.