Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 11.8 | 71.94 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 62.54 | 59.35 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 62.41 | 59.15 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 60.6 | 59.07 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 61.96 | 57.18 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 19.38 | 54.66 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 29.68 | 52.83 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 28.32 | 52.46 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 29.49 | 51.7 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 29.94 | 50.0 |
| CDY08306 | Canola | nucleus | 17.63 | 47.39 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 26.96 | 45.27 |
| Solyc02g050210.1.1 | Tomato | cytosol | 9.79 | 42.54 |
| KRH17731 | Soybean | mitochondrion | 27.48 | 39.92 |
| CDY64035 | Canola | nucleus | 25.41 | 37.05 |
| AT5G01630.1 | Thale cress | nucleus | 27.03 | 36.1 |
| Bra005674.1-P | Field mustard | nucleus | 24.63 | 35.85 |
| CDX80759 | Canola | nucleus | 25.41 | 35.41 |
| Solyc02g050200.1.1 | Tomato | nucleus | 17.89 | 34.85 |
| AT4G00020.2 | Thale cress | nucleus | 26.57 | 34.54 |
| CDY11187 | Canola | nucleus | 25.86 | 34.43 |
| Bra037060.1-P | Field mustard | nucleus | 25.41 | 33.85 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 6.68 | 21.41 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | UniProt:A0A1D6J355 | ProteinID:AQK42450.1 | InterPro:BRCA2_OB_1 |
| InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | ncoils:Coil | GO:GO:0000724 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 |
| SMART:SM01341 | SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 | InterPro:Tower_dom | UniParc:UPI0008432895 |
| EnsemblPlantsGene:Zm00001d024953 | EnsemblPlants:Zm00001d024953_P024 | EnsemblPlants:Zm00001d024953_T024 | SEG:seg | : | : |
Description
Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
Coordinates
chr10:-:96631242..96658847
Molecular Weight (calculated)
169453.0 Da
IEP (calculated)
8.597
GRAVY (calculated)
-0.406
Length
1543 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPSKWQVWGQ PDGSIVWLPV SDAPPNPPRP GPLRPAPRHP PLPDEAPIEE TLCPDTAGGC RISSMADLLL QAREQLIEGD AMDGLAQSVN TAGLFSTGSG
0101: RPLAVSQRAV RRASALVGEE VDEATDNNNK KRKKPFGCDA GLEGELANLH VPFGGGVHKD NFFPMFQSGS GKAVLLNKDS IQKARAVLEE NVENAAGAKQ
0201: PMFHTSTGRS VLVSKSSIDK ARAVLGGRMI AHEGDVGGVD GMEQFPVSQA GSGNVEGPGR PANQSLIFQT SSGRPVLISK RYVERSRALL MDEDVKNIRQ
0301: WDTGCQLPIF QTGLGRPVAV KHSSIKKAST ILGDGDVKRS GNGHTGVCTT PFQFETPKSV LMSSSLIING MTVTPEENTS VRAEKCFNDD GQLPLFQTGS
0401: GRSVTASKGS FKRASSVLEP RNIAKELEDE SHLNDGYATS IFKTGLGKSI LPTENSRERA QFVLEAKEAV KQAVISDIGA GFGENPMFHS GKQQFSPEND
0501: TSRPRASTPM EQGKFATKGY EDCGSPLPMF QTGSGKSVLV CESSMQKARA VLEEEEHYKL VKMDKKIAAS ASPLKTSHAR TVNISSTGVS RAATLLGLEE
0601: NTLSTQFFGH VSDKLGTEIT VKRGNPEHML DVASAHAISS GTHKGFIYPT ENPTHMDKHQ QFGFSKSSTS YVGEHSIRFS TAGGRSMAIS VDALQRAKSL
0701: LGDSDLVVSP NGSIGRSLAS AIENLPKPTI SPKGDVSNLS YGTRAIGYAV PDTPVTKTSA NQFHMGREYR PVNEIPKVPK PPSRCLSEGD NASNSKDKTQ
0801: WHHMPAGPLV DITNYMATCS GNTDCLANGK RIIGGRNSVS PFKRPRSSRF ITPIKNNKLS SAVFFTGESI VPPMQISPCR TMLSVRYPFQ HQRKNYKEYF
0901: GGPPCFKYLT EHVTDDVKLM DARRAEKFRF QHMDTGAEEF QKMLLTCGAS LSCATKEWVS NHYKWIVWKL ASLERCYPTR VAGKFLTVDN VLEELKYRYD
1001: REVNHGHRSA IKKILEGNSS PSLMMVLCIS AIYSCPYQNN NKLEVNKVDT NEDNSGNQSF SATNRNMSAN IELTDGWYSL DASLDVALLE QLEKRKLFVG
1101: QKLRIWGASL CGWSGPVSFH EVSGVVKLVV HINGTYRARW NDALGFCKHV GLPLAFRCIK VSGGRVPRTL VGITRIYPIL YRERLPDGRF VVRSERMERK
1201: ALELYHQRVS KITEDILFEQ QENCDSTDDN EEGATICKML EHAAEPEFIL AGMTPEQLKC FSSYIEKQKI VKQNEVSEKV EKALVVAGLS SRDVTPFLKV
1301: RVIGLVNKHS ASTSSNKEGL ITIWNPTEMQ KDNLVEGQAY SVMGLVPSNY CTEIMYLHAR GSSTTWKPLA SAQTTDFKPF FTPRRAIELL KFGEVPISSE
1401: FDIAGLILYV GNTYLCNNKK KQWLFLTDGS KFVSGQGCEE QDCLLAVSFS SATTDEDSTL FSYTLSGNTV GFSNLVKRQK DETRQVWVAE ATESSSYTLS
1501: NEIPRKSHLK EAAVLAERWA SRSYHKIQEL KERVLCIVGN AGV
0101: RPLAVSQRAV RRASALVGEE VDEATDNNNK KRKKPFGCDA GLEGELANLH VPFGGGVHKD NFFPMFQSGS GKAVLLNKDS IQKARAVLEE NVENAAGAKQ
0201: PMFHTSTGRS VLVSKSSIDK ARAVLGGRMI AHEGDVGGVD GMEQFPVSQA GSGNVEGPGR PANQSLIFQT SSGRPVLISK RYVERSRALL MDEDVKNIRQ
0301: WDTGCQLPIF QTGLGRPVAV KHSSIKKAST ILGDGDVKRS GNGHTGVCTT PFQFETPKSV LMSSSLIING MTVTPEENTS VRAEKCFNDD GQLPLFQTGS
0401: GRSVTASKGS FKRASSVLEP RNIAKELEDE SHLNDGYATS IFKTGLGKSI LPTENSRERA QFVLEAKEAV KQAVISDIGA GFGENPMFHS GKQQFSPEND
0501: TSRPRASTPM EQGKFATKGY EDCGSPLPMF QTGSGKSVLV CESSMQKARA VLEEEEHYKL VKMDKKIAAS ASPLKTSHAR TVNISSTGVS RAATLLGLEE
0601: NTLSTQFFGH VSDKLGTEIT VKRGNPEHML DVASAHAISS GTHKGFIYPT ENPTHMDKHQ QFGFSKSSTS YVGEHSIRFS TAGGRSMAIS VDALQRAKSL
0701: LGDSDLVVSP NGSIGRSLAS AIENLPKPTI SPKGDVSNLS YGTRAIGYAV PDTPVTKTSA NQFHMGREYR PVNEIPKVPK PPSRCLSEGD NASNSKDKTQ
0801: WHHMPAGPLV DITNYMATCS GNTDCLANGK RIIGGRNSVS PFKRPRSSRF ITPIKNNKLS SAVFFTGESI VPPMQISPCR TMLSVRYPFQ HQRKNYKEYF
0901: GGPPCFKYLT EHVTDDVKLM DARRAEKFRF QHMDTGAEEF QKMLLTCGAS LSCATKEWVS NHYKWIVWKL ASLERCYPTR VAGKFLTVDN VLEELKYRYD
1001: REVNHGHRSA IKKILEGNSS PSLMMVLCIS AIYSCPYQNN NKLEVNKVDT NEDNSGNQSF SATNRNMSAN IELTDGWYSL DASLDVALLE QLEKRKLFVG
1101: QKLRIWGASL CGWSGPVSFH EVSGVVKLVV HINGTYRARW NDALGFCKHV GLPLAFRCIK VSGGRVPRTL VGITRIYPIL YRERLPDGRF VVRSERMERK
1201: ALELYHQRVS KITEDILFEQ QENCDSTDDN EEGATICKML EHAAEPEFIL AGMTPEQLKC FSSYIEKQKI VKQNEVSEKV EKALVVAGLS SRDVTPFLKV
1301: RVIGLVNKHS ASTSSNKEGL ITIWNPTEMQ KDNLVEGQAY SVMGLVPSNY CTEIMYLHAR GSSTTWKPLA SAQTTDFKPF FTPRRAIELL KFGEVPISSE
1401: FDIAGLILYV GNTYLCNNKK KQWLFLTDGS KFVSGQGCEE QDCLLAVSFS SATTDEDSTL FSYTLSGNTV GFSNLVKRQK DETRQVWVAE ATESSSYTLS
1501: NEIPRKSHLK EAAVLAERWA SRSYHKIQEL KERVLCIVGN AGV
0001: MSTWQLFPDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIARE EAMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAEKVTYSD
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
0601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
0701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
0801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
0901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQPFFNPRK PISLSNLGEI
1001: PLSSEFDIAA YVVYVGNAYT DVLQKKQWVF VTDGSAQHSG EISNSLLAIS FSTSFMDDSS VSHISHNLVG SVVGFCNLIK RAKDVTNEIW VAEAAENSVY
1101: FINAEAAYSS HLKTSSAHIQ TWAKLSSSKS VIHELRQRVL SIIGACKSPS C
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
0601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
0701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
0801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
0901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQPFFNPRK PISLSNLGEI
1001: PLSSEFDIAA YVVYVGNAYT DVLQKKQWVF VTDGSAQHSG EISNSLLAIS FSTSFMDDSS VSHISHNLVG SVVGFCNLIK RAKDVTNEIW VAEAAENSVY
1101: FINAEAAYSS HLKTSSAHIQ TWAKLSSSKS VIHELRQRVL SIIGACKSPS C
Arabidopsis Description
MEE43BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.