Factsheet for Zm00001d044629_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d006089_P002
Zm00001d016055_P001
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Zm00001d006089_P002	AT1G67370.1	17937504
AT3G22880.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	16415210
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78622	Sorghum	nucleus	86.28	97.32
TraesCS5A01G133000.1	Wheat	nucleus	84.43	92.49
HORVU5Hr1G040730.2	Barley	nucleus	84.43	92.49
Os11t0146800-01	Rice	nucleus	83.64	92.15
TraesCS5D01G141200.1	Wheat	nucleus	83.11	91.57
TraesCS5B01G131900.1	Wheat	nucleus	82.59	90.99
Os12t0143800-01	Rice	mitochondrion	82.32	90.7
Solyc09g082790.2.1	Tomato	nucleus	74.93	85.03
Zm00001d050876_P001	Maize	cytosol	18.47	84.34
VIT_05s0020g04170.t01	Wine grape	nucleus	76.52	83.33
CDY46610	Canola	nucleus	72.56	82.83
Bra023796.1-P	Field mustard	nucleus	72.56	82.83
KRH35438	Soybean	nucleus	74.41	81.74
PGSC0003DMT400077570	Potato	nucleus	72.03	80.06
AT3G22880.1	Thale cress	nucleus	72.03	79.36
GSMUA_Achr8P26880_001	Banana	nucleus	77.57	76.17
CDX92963	Canola	nucleus	16.62	75.0
Bra001890.1-P	Field mustard	nucleus	16.62	75.0
Zm00001d035787_P001	Maize	cytosol	31.93	73.33
CDY34225	Canola	mitochondrion	72.3	72.68
KRG91377	Soybean	cytosol	27.44	71.72
Zm00001d016055_P001	Maize	plastid	44.85	61.82
Zm00001d041757_P001	Maize	cytosol	45.38	50.59
Zm00001d021898_P001	Maize	cytosol	43.8	48.82
Zm00001d006656_P001	Maize	cytosol	13.46	42.15
Zm00001d044278_P001	Maize	cytosol	21.9	28.23
Zm00001d010986_P001	Maize	vacuole	22.43	23.74
Zm00001d016839_P001	Maize	plastid	17.41	22.68

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	UniProt:A0A1D6NQ57	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR020587	InterPro:IPR020588	ProteinID:ONM42085.1	InterPro:P-loop_NTPase
PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238
UniParc:UPI000844F795	EnsemblPlantsGene:Zm00001d044629	EnsemblPlants:Zm00001d044629_P001	EnsemblPlants:Zm00001d044629_T001	:	:

Description

disrupted meiotic cDNA homolog1Meiotic recombination protein DMC1 homolog

Coordinates

chr3:+:233608712..233612903

Molecular Weight (calculated)

41311.0 Da

IEP (calculated)

6.057

GRAVY (calculated)

-0.052

Length

379 amino acids

Sequence
(BLAST)

001: MAPTRHADEG GQLQLIDAAS VDEEEECFES IDKLISQGIN AGDVRKLQDA GIYTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKLLNQ GFMTGNDLLL
101: KRKSVVRITT GSQALDELLG GGIETLCITE AFGEFRSGKT QLAHTLCVST QLPIHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFKLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDPKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA ISFLLCLSMF TACANGRLTF TACQNLARLP CIPNSTDSEP FLLSANCHD

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.