CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70947
CDX80742
CDX80759
CDX85268
CDX86370
CDX88837
CDX92430
CDX96096
CDY00096
CDY01805
CDY11187
CDY16571
CDY19992
CDY28889
CDY30231
CDY34225
CDY46610
CDY47782

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	CDX96096	AT1G67370.1	17937504
AT3G22880.1	CDY01805	AT1G67370.1	17937504
AT3G22880.1	CDY28889	AT1G67370.1	17937504
AT3G22880.1	CDY34225	AT3G22880.1	15014444
AT3G22880.1	CDY46610	AT3G22880.1	15014444
AT3G22880.1	CDX85268	AT3G29350.1	17937504
AT3G22880.1	CDX86370	AT3G29350.1	17937504
AT3G22880.1	CDY00096	AT3G29350.1	17937504
AT3G22880.1	CDY19992	AT3G29350.1	17937504
AT3G22880.1	CDX80742	AT4G29170.1	17937504
AT3G22880.1	CDY30231	AT4G29170.1	17937504
AT3G22880.1	CDY47782	AT4G29170.1	17937504
AT3G22880.1	CDX80759	AT5G01630.1	15014444
AT3G22880.1	CDY11187	AT5G01630.1	15014444
AT3G22880.1	CDX80759	AT5G01630.1	16415210
AT3G22880.1	CDY11187	AT5G01630.1	16415210
AT3G22880.1	CDX70947	AT5G20850.1	15014444
AT3G22880.1	CDX88837	AT5G20850.1	15014444
AT3G22880.1	CDX92430	AT5G20850.1	15014444
AT3G22880.1	CDY16571	AT5G20850.1	15014444
AT3G22880.1	CDX70947	AT5G20850.1	16415210
AT3G22880.1	CDX88837	AT5G20850.1	16415210
AT3G22880.1	CDX92430	AT5G20850.1	16415210
AT3G22880.1	CDY16571	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023796.1-P	Field mustard	nucleus	87.8	99.7
CDY46610	Canola	nucleus	87.27	99.1
Solyc09g082790.2.1	Tomato	nucleus	77.98	88.02
AT3G22880.1	Thale cress	nucleus	80.11	87.79
VIT_05s0020g04170.t01	Wine grape	nucleus	79.84	86.49
KRH35438	Soybean	nucleus	78.51	85.8
PGSC0003DMT400077570	Potato	nucleus	75.07	82.99
OQU78622	Sorghum	nucleus	72.15	80.95
CDX92963	Canola	nucleus	18.04	80.95
Os11t0146800-01	Rice	nucleus	72.15	79.07
HORVU5Hr1G040730.2	Barley	nucleus	72.41	78.9
OQU84696	Sorghum	nucleus	71.88	78.78
TraesCS5D01G141200.1	Wheat	nucleus	71.62	78.49
TraesCS5A01G133000.1	Wheat	nucleus	71.88	78.32
Os12t0143800-01	Rice	mitochondrion	71.35	78.2
TraesCS5B01G131900.1	Wheat	nucleus	71.09	77.91
GSMUA_Achr8P26880_001	Banana	nucleus	74.27	72.54
Zm00001d044629_P001	Maize	nucleus	72.68	72.3
KRG91377	Soybean	cytosol	27.59	71.72
Zm00001d050876_P001	Maize	cytosol	15.65	71.08
Zm00001d035787_P001	Maize	cytosol	26.26	60.0
Zm00001d016055_P001	Maize	plastid	40.32	55.27
CDX92430	Canola	cytosol	40.58	47.96
CDX88837	Canola	cytosol	41.11	47.84
CDX70947	Canola	cytosol	41.11	47.84
CDY16571	Canola	cytosol	40.32	47.65
CDY68195	Canola	cytosol, nucleus, plastid	23.08	28.62
CDY18933	Canola	plastid	24.67	26.8
CDX74725	Canola	nucleus	25.2	23.51
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	13.53	16.67
CDY53383	Canola	cytosol	19.63	16.12
CDX77188	Canola	cytosol	19.36	15.9
CDY11869	Canola	cytosol	9.55	15.65

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	GO:A0A078H6L7	UniProt:A0A078H6L7	EnsemblPlants:CDY34225
ProteinID:CDY34225	ProteinID:CDY34225.1	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00056222001	InterPro:IPR020587	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd
InterPro:RecA_monomer-monomer_interface	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI0004EF2A12	SEG:seg

Description

BnaA01g24420DBnaA01g24420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6L7]

Coordinates

chrLK032331:+:81690..84748

Molecular Weight (calculated)

41347.4 Da

IEP (calculated)

9.067

GRAVY (calculated)

-0.097

Length

377 amino acids

Sequence
(BLAST)

001: MISKFNGILR AVQFRLPPYK TLRSSTLILS SFGLSLSLSR FKRKPKMLSA LKSEEASMQL VEREEIEDDE LFEAIDKLIA QGINAGDVKK LQDAGIHTCN
101: GLMMHTKKNL TGIKGLSEAK VDKICEAAEK IVNFGYMTGS DALLKRKSVV RITTGSQALD DLLGGGIETA AITEAFGEFR SGKTQLAHTL CVTTQLPTSM
201: KGGNGKVAYI DTEGTFRPDR IVQIAERFGM DPGAVLDNII YARAYTYEHQ HNLLLGLAAK MSEEPFKILI VDSIIALFRV DFTGRGELAD RQQKLAQMLS
301: RIIKIAEEFN VAVYMTNQVI SDPGGGMFIS DPKKPAGGHV LAHAVTIRLS FRKGKGEQRV CKVFDAPNLP EGEAISF

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.