CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80742
CDY30231
CDY34225
CDY46610
CDY47782

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67370.1	CDY34225	AT3G22880.1	17937504
AT1G67370.1	CDY46610	AT3G22880.1	17937504
AT1G67370.1	CDX80742	AT4G29170.1	17937504
AT1G67370.1	CDY30231	AT4G29170.1	17937504
AT1G67370.1	CDY47782	AT4G29170.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g03580.t01	Wine grape	cytosol	12.25	72.04
CDY01805	Canola	nucleus	78.98	70.36
CDX96096	Canola	cytosol	78.98	69.45
AT1G67370.1	Thale cress	nucleus	70.38	64.6
Solyc04g007330.1.1	Tomato	nucleus	54.66	50.17
VIT_01s0010g03590.t01	Wine grape	nucleus	48.26	50.09
KRG97420	Soybean	nucleus	54.3	48.61
PGSC0003DMT400074843	Potato	cytosol	47.17	46.32
TraesCS5D01G294100.1	Wheat	nucleus	47.9	44.26
KRH31480	Soybean	nucleus	39.31	43.61
Os09t0506800-02	Rice	nucleus	48.63	43.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	49.91	43.26
OQU89747	Sorghum	plastid	49.36	41.86
TraesCS5B01G285800.1	Wheat	nucleus	39.67	40.33
TraesCS5A01G286500.1	Wheat	nucleus	38.39	39.25
Zm00001d006089_P002	Maize	nucleus	32.54	37.32
OQU89777	Sorghum	nucleus	33.46	25.77
EER89142	Sorghum	mitochondrion	10.79	13.85
Os12t0606600-01	Rice	nucleus	14.26	12.36

Protein Annotations

EnsemblPlants:CDY28889	EnsemblPlantsGene:GSBRNA2T00041576001	Gene3D:3.30.900.10	InterPro:HORMA_dom	InterPro:HORMA_dom_sf	InterPro:IPR003511
InterPro:IPR036570	PANTHER:PTHR45173	PFAM:PF02301	PFscan:PS50815	ProteinID:CDY28889	ProteinID:CDY28889.1
SEG:seg	SUPFAM:SSF56019	UniParc:UPI0004EEAFA8	UniProt:A0A078GUS5	MapMan:13.3.6.1.4	:

Description

BnaC06g26770DBnaC06g26770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUS5]

Coordinates

chrLK032227:+:406844..411956

Molecular Weight (calculated)

62567.8 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.607

Length

547 amino acids

Sequence
(BLAST)

001: MNFLKPYLYL LRFQMRVHIV VMIQKLKEAE ITEQDSLLLT RNLLRIAIFN ISYIRGLFPE NYFNDKSVPA LDMKIKKLLP IDAESRRLVD WMEKVDGPMI
101: EEYSFSFSYS DSDSQDVSMN ISLTGTKKHG GVQLAKYTSS VDEDSRQNAR QSMNIFTLLL LLLRTIVMKL MYYDDVTPQD YEPPFFRGCT EEEAQHVWPK
201: DPLRMEVGNV NSKHLVLTLK VKSVLDPCED ENDGMQDGGK SIGPDSVHDD QLSDSDSEIS QTRETQFLVA PVEKQEDDNG EVDEDDTHDS IETQQQLARV
301: KDWINSRHLD TLELTDVLSN FPEISIALTE EIMDQLEKEG ALSKTRKDTY VVNRDETPWS EFNFVKDESD ALYHSLPMQY VTTTKLHNML DGEASQTAVR
401: KLIYRMIQEG YLEDSNNRRL GKRVVHSSLT ERKLNEVRKV LDLNDDMDVD ADEAVNKTNA TLTAAEVSTR AGIHSIGSDL THTKERYVVQ QNGPVPSEQT
501: ISKANDTPVS INAQPVASRE SFSRYRKTSM VRDPILQQSK RQKAQAN

Best Arabidopsis Sequence Match ( AT1G67370.1 )
(BLAST)

001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN

Arabidopsis Description

ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.