Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g04170.t01 | |
| VIT_11s0016g02770.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67370.1 | VIT_05s0020g04170.t01 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | VIT_11s0016g02770.t01 | AT4G29170.1 | 17937504 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G67370.1 | Thale cress | nucleus | 81.72 | 12.75 |
| Solyc04g007330.1.1 | Tomato | nucleus | 80.65 | 12.58 |
| KRG97420 | Soybean | nucleus | 80.65 | 12.28 |
| CDY28889 | Canola | endoplasmic reticulum, extracellular | 72.04 | 12.25 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 81.72 | 12.04 |
| Bra004222.1-P | Field mustard | nucleus | 77.42 | 12.02 |
| CDX96096 | Canola | cytosol | 79.57 | 11.9 |
| CDY01805 | Canola | nucleus | 77.42 | 11.73 |
| PGSC0003DMT400074843 | Potato | cytosol | 26.88 | 4.49 |
| Os12t0606600-01 | Rice | nucleus | 9.68 | 1.43 |
| EER89142 | Sorghum | mitochondrion | 1.08 | 0.23 |
| KRH31480 | Soybean | nucleus | 0.0 | 0.0 |
| VIT_01s0010g03590.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_01s0010g03580 | EMBL:FN595754 | EnsemblPlants:VIT_01s0010g03580.t01 | EnsemblPlantsGene:VIT_01s0010g03580 | Gene3D:3.30.900.10 | InterPro:HORMA_dom |
| InterPro:HORMA_dom_sf | InterPro:IPR003511 | InterPro:IPR036570 | PANTHER:PTHR45173 | PFAM:PF02301 | PFscan:PS50815 |
| ProteinID:CBI27651 | ProteinID:CBI27651.3 | SUPFAM:SSF56019 | UniParc:UPI0001BE31E9 | UniProt:D7TAX8 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1:+:20933417..20934933
Molecular Weight (calculated)
10836.6 Da
IEP (calculated)
8.948
GRAVY (calculated)
0.124
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MAILTLSTDN YFVVAQKLKE AEITEQDSLL LTRNLLRIAI FNISYIRGLF PEKYFNDKSV PALEMKIKKL MPMDAESRRL IDWMEKGTLI LLI
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.