Factsheet for VIT_05s0020g04170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03580.t01
VIT_01s0010g03590.t01
VIT_05s0020g04170.t01
VIT_07s0104g00880.t01
VIT_08s0058g00500.t01
VIT_11s0016g00340.t01
VIT_11s0016g02770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	VIT_01s0010g03580.t01	AT1G67370.1	17937504
AT3G22880.1	VIT_01s0010g03590.t01	AT1G67370.1	17937504
AT3G22880.1	VIT_05s0020g04170.t01	AT3G22880.1	15014444
AT3G22880.1	VIT_07s0104g00880.t01	AT3G29350.1	17937504
AT3G22880.1	VIT_11s0016g02770.t01	AT4G29170.1	17937504
AT3G22880.1	VIT_08s0058g00500.t01	AT5G01630.1	15014444
AT3G22880.1	VIT_08s0058g00500.t01	AT5G01630.1	16415210
AT3G22880.1	VIT_11s0016g00340.t01	AT5G20850.1	15014444
AT3G22880.1	VIT_11s0016g00340.t01	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082790.2.1	Tomato	nucleus	89.94	93.71
KRH35438	Soybean	nucleus	92.82	93.62
CDY46610	Canola	nucleus	87.07	91.27
Bra023796.1-P	Field mustard	nucleus	86.49	90.66
AT3G22880.1	Thale cress	nucleus	88.79	89.83
PGSC0003DMT400077570	Potato	nucleus	86.78	88.56
OQU78622	Sorghum	nucleus	83.33	86.31
OQU84696	Sorghum	nucleus	85.06	86.05
Os11t0146800-01	Rice	nucleus	85.06	86.05
Os12t0143800-01	Rice	mitochondrion	84.48	85.47
TraesCS5D01G141200.1	Wheat	nucleus	84.2	85.17
TraesCS5B01G131900.1	Wheat	nucleus	83.62	84.59
KRG91377	Soybean	cytosol	35.06	84.14
HORVU5Hr1G040730.2	Barley	nucleus	82.76	83.24
TraesCS5A01G133000.1	Wheat	nucleus	82.76	83.24
CDY34225	Canola	mitochondrion	86.49	79.84
GSMUA_Achr8P26880_001	Banana	nucleus	87.36	78.76
Zm00001d044629_P001	Maize	nucleus	83.33	76.52
Bra001890.1-P	Field mustard	nucleus	18.1	75.0
CDX92963	Canola	nucleus	18.1	75.0
Zm00001d050876_P001	Maize	cytosol	17.82	74.7
Zm00001d035787_P001	Maize	cytosol	31.03	65.45
Zm00001d016055_P001	Maize	plastid	44.25	56.0
VIT_11s0016g00340.t01	Wine grape	cytosol	48.28	49.85
VIT_15s0048g00380.t01	Wine grape	nucleus	28.45	28.61
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	21.84	25.33
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	25.0	23.45

Protein Annotations

Gene3D:1.10.150.20	EntrezGene:100254575	wikigene:100254575	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:AM439431	ProteinID:CAN71783	ProteinID:CAN71783.1	ProteinID:CBI26317	ProteinID:CBI26317.3	UniProt:D7T746
InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	EMBL:FN595749	GO:GO:0000003
GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000730	GO:GO:0000794	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518
GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006312
GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787	GO:GO:0042148
GO:GO:0070192	InterPro:IPR020587	InterPro:IPR020588	EntrezGene:LOC100254575	wikigene:LOC100254575	InterPro:P-loop_NTPase
PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540
TIGRFAMs:TIGR02238	UniParc:UPI0001BE2DD4	ArrayExpress:VIT_05s0020g04170	EnsemblPlantsGene:VIT_05s0020g04170	EnsemblPlants:VIT_05s0020g04170.t01	RefSeq:XP_002279369
RefSeq:XP_002279369.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:5812567..5816771

Molecular Weight (calculated)

37929.7 Da

IEP (calculated)

5.494

GRAVY (calculated)

-0.107

Length

348 amino acids

Sequence
(BLAST)

001: MIAALKSEEH SQLQLVERED IEDEEDLFEA IDKLISQGIN AGDVKKLQDA GIYTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYITGSDALL
101: RRKSVVRITT GSQALDELLG GGIETSAITE AFGEFRSGKT QLAHTLCVST QLPTSMRGGN GKVAYIDTEG TFRPDRIVPI AERFGMDAGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRLLIVDSV IALFRVDFTG RGELADRQQK LAQMLSRLTK IAEEFNVAVY MTNQVIADPG GGVFISDPKK PAGGHVLAHA
301: ATIRLMFRKG KGEQRVCKVF DAPNLPEAEA ISFPLFQITP GGIADAKD

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.