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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG91377
KRG95451
KRG97420
KRH02540
KRH17731
KRH19405
KRH31480
KRH31957
KRH35438
KRH67127
KRH71497
KRH74183

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22880.1 KRG97420 AT1G67370.1 17937504
AT3G22880.1 KRH31480 AT1G67370.1 17937504
AT3G22880.1 KRG91377 AT3G22880.1 15014444
AT3G22880.1 KRH35438 AT3G22880.1 15014444
AT3G22880.1 KRG95451 AT3G29350.1 17937504
AT3G22880.1 KRH31957 AT3G29350.1 17937504
AT3G22880.1 KRH67127 AT3G29350.1 17937504
AT3G22880.1 KRH71497 AT3G29350.1 17937504
AT3G22880.1 KRH74183 AT4G29170.1 17937504
AT3G22880.1 KRH17731 AT5G01630.1 15014444
AT3G22880.1 KRH17731 AT5G01630.1 16415210
AT3G22880.1 KRH02540 AT5G20850.1 15014444
AT3G22880.1 KRH19405 AT5G20850.1 15014444
AT3G22880.1 KRH02540 AT5G20850.1 16415210
AT3G22880.1 KRH19405 AT5G20850.1 16415210
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0020g04170.t01 Wine grape nucleus 93.62 92.82
Solyc09g082790.2.1 Tomato nucleus 86.67 89.52
Bra023796.1-P Field mustard nucleus 86.09 89.46
CDY46610 Canola nucleus 86.09 89.46
AT3G22880.1 Thale cress nucleus 88.99 89.24
PGSC0003DMT400077570 Potato nucleus 84.06 85.04
OQU84696 Sorghum nucleus 84.64 84.88
KRG91377 Soybean cytosol 35.65 84.83
Os11t0146800-01 Rice nucleus 84.06 84.3
Os12t0143800-01 Rice mitochondrion 83.48 83.72
OQU78622 Sorghum nucleus 81.45 83.63
TraesCS5B01G131900.1 Wheat nucleus 83.19 83.43
TraesCS5D01G141200.1 Wheat nucleus 83.19 83.43
HORVU5Hr1G040730.2 Barley nucleus 81.16 80.92
TraesCS5A01G133000.1 Wheat nucleus 80.58 80.35
CDY34225 Canola mitochondrion 85.8 78.51
Bra001890.1-P Field mustard nucleus 18.55 76.19
CDX92963 Canola nucleus 18.55 76.19
GSMUA_Achr8P26880_001 Banana nucleus 85.22 76.17
Zm00001d044629_P001 Maize nucleus 81.74 74.41
Zm00001d050876_P001 Maize cytosol 17.68 73.49
Zm00001d035787_P001 Maize cytosol 29.28 61.21
Zm00001d016055_P001 Maize plastid 44.35 55.64
KRH02540 Soybean cytosol 51.3 51.6
KRH19405 Soybean cytosol 51.3 51.45
KRH65320 Soybean mitochondrion, nucleus 29.86 29.68
KRH01614 Soybean nucleus 21.16 25.35
KRH10360 Soybean mitochondrion, nucleus, plastid 24.93 22.75
Protein Annotations
Gene3D:1.10.150.20MapMan:13.3.6.4.1Gene3D:3.40.50.300EntrezGene:548075UniProt:A0A0R0HYK0InterPro:AAA+_ATPase
InterPro:DMC1_rcmbaseInterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeInterPro:DNA_repair_Rad51/TF_NusA_a-hlxEnsemblPlantsGene:GLYMA_10G243200GO:GO:0000003
GO:GO:0000150GO:GO:0000166GO:GO:0000400GO:GO:0000730GO:GO:0000794GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003690GO:GO:0003697GO:GO:0003824GO:GO:0004518
GO:GO:0004520GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005654GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006312
GO:GO:0006950GO:GO:0007049GO:GO:0007131GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009628GO:GO:0009987GO:GO:0010212GO:GO:0016043GO:GO:0016787GO:GO:0042148
GO:GO:0051321GO:GO:0070192InterPro:IPR020587InterPro:IPR020588EnsemblPlants:KRH35438ProteinID:KRH35438
ProteinID:KRH35438.1InterPro:P-loop_NTPasePFAM:PF08423PIRSF:PIRSF005856PFscan:PS50162PFscan:PS50163
PANTHER:PTHR22942PANTHER:PTHR22942:SF30UniProt:Q96449InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bdInterPro:RecA_monomer-monomer_interface
SMART:SM00382SUPFAM:SSF47794SUPFAM:SSF52540TIGRFAMs:TIGR02238EMBL:U66836UniParc:UPI00001294D3
Description
hypothetical protein
Coordinates
chr10:+:47174455..47178553
Molecular Weight (calculated)
37477.2 Da
IEP (calculated)
5.304
GRAVY (calculated)
-0.119
Length
345 amino acids
Sequence
(BLAST)
001: MLATLKSEES SGQLQLVERE DIDDDEDLFE AIDKLIAQGI NAGDVKKLQD AGIYTCNGLM MHTKKNLTGI KGLSEAKVDK ICEAAEKLVN FGYITGSDAL
101: LKRKSVIRIT TGSQALDELL GGGVETSAIT EAFGEFRSGK TQLAHTLCVS TQLPTNMRGG NGKVAYIDTE GTFRPDRIVP IAERFGMDPG AVLDNIIYAR
201: AYTYEHQYNL LLGLAAKMSE EPFRLLIVDS VIALFRVDFS GRGELADRQQ KLAQMLSRLI KIAEEFNVAV YMTNQVISDP GGGVFVTDPK KPAGGHVLAH
301: AATVRLMFRK GKGEQRICKV FDAPNLPEAE AVFQITAGGI ADAKD
Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD
Arabidopsis Description
DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.