CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91377
KRH02540
KRH04963
KRH16129
KRH19405
KRH35438
KRH54417
KRH63506

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	KRG91377	AT3G22880.1	15014444
AT5G01630.1	KRH35438	AT3G22880.1	15014444
AT5G01630.1	KRG91377	AT3G22880.1	16415210
AT5G01630.1	KRH35438	AT3G22880.1	16415210
AT5G01630.1	KRH02540	AT5G20850.1	15014444
AT5G01630.1	KRH19405	AT5G20850.1	15014444
AT5G01630.1	KRH02540	AT5G20850.1	16415210
AT5G01630.1	KRH19405	AT5G20850.1	16415210
AT5G01630.1	KRH04963	AT5G45010.1	16415210
AT5G01630.1	KRH16129	AT5G45010.1	16415210
AT5G01630.1	KRH54417	AT5G45010.1	16415210
AT5G01630.1	KRH63506	AT5G45010.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00500.t01	Wine grape	cytosol	32.2	62.52
CDY08306	Canola	nucleus	30.23	55.92
Solyc02g050210.1.1	Tomato	cytosol	17.61	52.68
CDY64035	Canola	nucleus	43.97	44.14
Os01t0164800-01	Rice	cytosol, mitochondrion	10.26	43.08
Bra005674.1-P	Field mustard	nucleus	42.28	42.36
GSMUA_Achr5P28060_001	Banana	nucleus	36.16	41.78
CDX80759	Canola	nucleus	43.03	41.28
AT5G01630.1	Thale cress	nucleus	44.73	41.13
CDY11187	Canola	nucleus	44.07	40.38
Bra037060.1-P	Field mustard	nucleus	42.84	39.29
AT4G00020.2	Thale cress	nucleus	43.69	39.09
Solyc02g050200.1.1	Tomato	nucleus	28.34	38.01
Zm00001d024953_P024	Maize	nucleus	39.92	27.48
TraesCS3A01G099300.4	Wheat	nucleus	38.14	25.58
TraesCS3D01G099600.1	Wheat	nucleus	38.42	25.06
TraesCS3B01G115500.3	Wheat	nucleus	38.23	24.97
HORVU3Hr1G017990.10	Barley	nucleus, plastid	38.04	24.16
Os01t0164900-01	Rice	cytosol, mitochondrion	7.91	17.46
TraesCS3A01G089200.3	Wheat	nucleus	8.0	9.66
TraesCS3D01G089500.2	Wheat	nucleus	7.82	9.57
TraesCS3B01G104500.1	Wheat	nucleus	7.44	9.48
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	7.34	8.44

Protein Annotations

Gene3D:1.10.132.40	EntrezGene:100797849	MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	EMBL:ACUP02007832
InterPro:BRCA2	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx	InterPro:BRCA2_hlx_sf	InterPro:BRCA2_repeat	EnsemblPlantsGene:GLYMA_13G010700
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:I1LXQ3	InterPro:IPR002093	EnsemblPlants:KRH17731	ProteinID:KRH17731	ProteinID:KRH17731.1
InterPro:NA-bd_OB-fold	PFAM:PF00634	PFAM:PF09103	PFAM:PF09169	PFscan:PS50138	PANTHER:PTHR11289
SMART:SM01341	SUPFAM:SSF50249	SUPFAM:SSF81872	SUPFAM:SSF81878	InterPro:Tower_dom	UniParc:UPI000233B3D2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:2900013..2911309

Molecular Weight (calculated)

118199.0 Da

IEP (calculated)

8.926

GRAVY (calculated)

-0.452

Length

1062 amino acids

Sequence
(BLAST)

0001: MRTKKTMCTW QILSNSPNNF HWQRITTTTT HQHASPPSFP LPSMQDLLRQ GTPTLPLQDD AVARGEERVL DDGFGFSNSL FTTGSGKKVT ISSSGLVRAK
0101: TLLDTIDSSI QSPHRTNKLH AIGEKRKQRQ EEEDESPQLK LHRVIDSPSV GGGCRALKKN GFEETDAYKQ APIKFHTAGG RSISISKDAL QRAQSLLGDV
0201: GDLFEGGDAG SSMFSFPFER QADTAASSQR GDCNTPLVRR VLTPARSNCT AKSFTFPLQS SRQRELPPKF PCEGDGNNLI TEFDAVGEES GYNSLKSTNA
0301: CGQKKPLYGW NQAPHSAVHD SSLNGFSSKI DTHAVSIRRP LVDVSNTTNP DQTNNRQPAS GKRRLGLRVT VSPFKKPRSS QISVPLEQDI GKSPHDLSQL
0401: SSGVSGCKRE VSIRYPFQYP RMHIKDFFVV PPLQEKAHFP NLSRQVTSVN AEKYVFYERS GDNGMGAEAF VHLLAHHGAS MHFATKEWVT NHYKWIVWKL
0501: ACYERYYPAS SAGKFLTVTN VLEELKYRYE REVNHGHRST IKKILEGDAP PSSMMILCIS SICSSHATES GTCFETQNGT QKAAAVKVEL TDGWYLMNAI
0601: LDVPLSKQHA AGRLFVGQKL RISRAGLCGW NGPVSPLEVS STVSLLLHIN GTYRAHWAER LGFCKIAGPP LAFRCIKSNG GLVPQTLAGI TRIYPILYME
0701: RLSSGRSVVM SERMENKMME LYNQRRSAVV DGIISEYQKE RPHIYYDSDS EGAKIYNMLE TAEEPEFLMA DMSPEQLNSF ATYKAKLNAI RQSEMDKSIE
0801: KALKDAGLGS RQVTPFMRLR VVGLTYKTRQ DKPKEGIVAI WNPTETQRQE LVEGGAYAIS GLMPSSSDSD ILHLDTRGSS TKWLPLSYNS RKQFKPFFCN
0901: RKSIPLTSLG DIPLSNEFDI TAYVVHVGGV YISNQQKKQW VFVTDGSIMN GLQSEKLIDS LLAICFCSPL IDHDSFPPIN YNLAGSTVGF CNLIKKEKDH
1001: TNHIWVADAN ENSAYYLNFD STNCSHLRNA ASSVRAWANH SSLIIEKLKE KVMYVVGEDC KA

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.