Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G089500.2 | Wheat | nucleus | 87.76 | 84.31 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 88.48 | 83.75 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 88.72 | 79.98 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 81.39 | 41.7 |
| Zm00001d024953_P024 | Maize | nucleus | 52.46 | 28.32 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 8.76 | 15.18 |
| Solyc02g050200.1.1 | Tomato | nucleus | 10.8 | 11.36 |
| AT5G01630.1 | Thale cress | nucleus | 10.8 | 7.79 |
| AT4G00020.2 | Thale cress | nucleus | 10.92 | 7.67 |
| CDX80759 | Canola | nucleus | 9.96 | 7.5 |
| KRH17731 | Soybean | mitochondrion | 9.48 | 7.44 |
| CDY64035 | Canola | nucleus | 9.24 | 7.28 |
| Bra037060.1-P | Field mustard | nucleus | 9.72 | 6.99 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 7.68 | 6.96 |
| Bra005674.1-P | Field mustard | nucleus | 8.64 | 6.79 |
| CDY11187 | Canola | nucleus | 9.36 | 6.73 |
| Solyc02g050210.1.1 | Tomato | cytosol | 0.12 | 0.28 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 0.0 | 0.0 |
| CDY08306 | Canola | nucleus | 0.0 | 0.0 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G104500.1 | EnsemblPlantsGene:TraesCS3B01G104500 | InterPro:BRCA2_repeat | InterPro:IPR002093 | PFAM:PF00634 | PFscan:PS50138 |
| SEG:seg | MapMan:13.3.6.4.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:70965398..70979299
Molecular Weight (calculated)
89070.2 Da
IEP (calculated)
8.670
GRAVY (calculated)
-0.492
Length
833 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRRWQVWGR PDGSQVWIPA PDPDAPPPPA AGIAAASFED APVKGGGAAD GCRVESMADL LVQARNKLLE GDGMAGATGD AGKGELFCTG SGRPVSLSER
101: AIRRARALVG EDVERAGIKR KQSFGDLPDV EGGLREMDAP FRGGVQNTTM PPLFQTGSGK AALLGRNSIQ KARVVLEGVD GMEQFPLFQT GSGRVVSVSS
201: ASVQKAKSVL KDNNTSEENM ESFGRPNQPM MFQTGSGRPV TISERSIERS RAAVNKGDAE KSGHWDTGCQ FPMFQTGLGK PVAVSWSAVQ KARAVLEEEK
301: IKTTGHGDSS VYATTLQSET PRSVLMSSSL IMTDRSVTPN GDSAMQVTRM EKNHEGGNHL PLFQTGLGRS IAISKSSVKR ATAVLEPRNI AKELEDEAHL
401: DGGHDTSMFK TGLGRSILAS DGCRNELCIL EAEEAVKSVN NCNGEAFVEE AAFQAGIQKF VPQNRSSSHK ASMLLEQRNF MEKGYEDCGS QLPMFQTGSG
501: KSVLISETSV QKAKVVLEEE VKINRDNHNL LNLDKNIPVF ASPLKTSCAK TVNISSAGVS RAATLLGLEE NTLSTQFFGH VGDKLGTKIN FERKNPEQRL
601: DLASCSTENQ VHKEPHRPFE LSNNTVSDSG EHSIRFSTAG GRSVAISSDA LQRARSLLGE SDLVVSTNNL VGRPLASACN VEMPNSTVAP KGGPDLSKIS
701: RVNGKTEVAT FSHQTMSGRK HTGSSKNAAP AIPATNKPPN MFHVGSRSIS EIPKVPKPSS MCLSETDSAN DTKNKAQRLH MPAGALVDIS NIMGTHSGNI
801: DHAVNEKRRS GGSNSASSFK RPRSSRSFDL HPC
101: AIRRARALVG EDVERAGIKR KQSFGDLPDV EGGLREMDAP FRGGVQNTTM PPLFQTGSGK AALLGRNSIQ KARVVLEGVD GMEQFPLFQT GSGRVVSVSS
201: ASVQKAKSVL KDNNTSEENM ESFGRPNQPM MFQTGSGRPV TISERSIERS RAAVNKGDAE KSGHWDTGCQ FPMFQTGLGK PVAVSWSAVQ KARAVLEEEK
301: IKTTGHGDSS VYATTLQSET PRSVLMSSSL IMTDRSVTPN GDSAMQVTRM EKNHEGGNHL PLFQTGLGRS IAISKSSVKR ATAVLEPRNI AKELEDEAHL
401: DGGHDTSMFK TGLGRSILAS DGCRNELCIL EAEEAVKSVN NCNGEAFVEE AAFQAGIQKF VPQNRSSSHK ASMLLEQRNF MEKGYEDCGS QLPMFQTGSG
501: KSVLISETSV QKAKVVLEEE VKINRDNHNL LNLDKNIPVF ASPLKTSCAK TVNISSAGVS RAATLLGLEE NTLSTQFFGH VGDKLGTKIN FERKNPEQRL
601: DLASCSTENQ VHKEPHRPFE LSNNTVSDSG EHSIRFSTAG GRSVAISSDA LQRARSLLGE SDLVVSTNNL VGRPLASACN VEMPNSTVAP KGGPDLSKIS
701: RVNGKTEVAT FSHQTMSGRK HTGSSKNAAP AIPATNKPPN MFHVGSRSIS EIPKVPKPSS MCLSETDSAN DTKNKAQRLH MPAGALVDIS NIMGTHSGNI
801: DHAVNEKRRS GGSNSASSFK RPRSSRSFDL HPC
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.