Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G131900.1 | Wheat | nucleus | 98.84 | 98.84 |
| Os11t0146800-01 | Rice | nucleus | 97.38 | 97.38 |
| Os12t0143800-01 | Rice | mitochondrion | 95.93 | 95.93 |
| TraesCS5A01G133000.1 | Wheat | nucleus | 95.93 | 95.38 |
| HORVU5Hr1G040730.2 | Barley | nucleus | 95.64 | 95.09 |
| OQU84696 | Sorghum | nucleus | 95.06 | 95.06 |
| OQU78622 | Sorghum | nucleus | 92.44 | 94.64 |
| VIT_05s0020g04170.t01 | Wine grape | nucleus | 85.17 | 84.2 |
| Solyc09g082790.2.1 | Tomato | nucleus | 81.1 | 83.53 |
| KRH35438 | Soybean | nucleus | 83.43 | 83.19 |
| Zm00001d044629_P001 | Maize | nucleus | 91.57 | 83.11 |
| Zm00001d050876_P001 | Maize | cytosol | 19.77 | 81.93 |
| AT3G22880.1 | Thale cress | nucleus | 81.4 | 81.4 |
| CDY46610 | Canola | nucleus | 78.49 | 81.33 |
| Bra023796.1-P | Field mustard | nucleus | 78.49 | 81.33 |
| PGSC0003DMT400077570 | Potato | nucleus | 78.78 | 79.47 |
| GSMUA_Achr8P26880_001 | Banana | nucleus | 86.63 | 77.2 |
| CDX92963 | Canola | nucleus | 18.02 | 73.81 |
| Bra001890.1-P | Field mustard | nucleus | 18.02 | 73.81 |
| KRG91377 | Soybean | cytosol | 30.52 | 72.41 |
| CDY34225 | Canola | mitochondrion | 78.49 | 71.62 |
| Zm00001d035787_P001 | Maize | cytosol | 32.56 | 67.88 |
| Zm00001d016055_P001 | Maize | plastid | 47.38 | 59.27 |
| TraesCS7D01G381300.1 | Wheat | cytosol | 51.74 | 52.05 |
| TraesCS2D01G214900.1 | Wheat | cytosol | 26.16 | 31.03 |
| TraesCS1D01G059600.2 | Wheat | cytosol, peroxisome, plastid | 24.42 | 22.64 |
| TraesCS6D01G182800.1 | Wheat | cytosol, nucleus, plastid | 18.6 | 22.54 |
Protein Annotations
| Gene3D:1.10.150.20 | MapMan:13.3.6.4.1 | Gene3D:3.40.50.300 | InterPro:DMC1_rcmbase | InterPro:DNA_recomb/repair_Rad51_C | InterPro:DNA_recomb/repair_RecA-like |
| InterPro:DNA_repair_Rad51/TF_NusA_a-hlx | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0007049 |
| GO:GO:0007131 | GO:GO:0008094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0051026 | InterPro:IPR020587 | InterPro:IPR020588 | InterPro:P-loop_NTPase | PFAM:PF08423 |
| PIRSF:PIRSF005856 | PFscan:PS50162 | PFscan:PS50163 | PANTHER:PTHR22942 | PANTHER:PTHR22942:SF30 | InterPro:Rad51_DMC1_RadA |
| InterPro:RecA_ATP-bd | InterPro:RecA_monomer-monomer_interface | SUPFAM:SSF47794 | SUPFAM:SSF52540 | TIGRFAMs:TIGR02238 | EnsemblPlantsGene:TraesCS5D01G141200 |
| EnsemblPlants:TraesCS5D01G141200.1 | TIGR:cd01123 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:224946988..224950703
Molecular Weight (calculated)
37677.7 Da
IEP (calculated)
5.701
GRAVY (calculated)
-0.140
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSKQYDEG GQLQLMEADR VEEEEECFES IDKLISQGIN SGDVKKLQDA GIYTCNGLMM HTKKSLTGIK GLSEAKVDKI CEAAEKLLSQ GFMTGSDLLI
101: KRKSVVRITT GSQTLDELLG GGIETLCITE AFGEFRSGKT QLAHTLCVST QLPLHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFRLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDPKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA VFQITTGGLM DVKD
101: KRKSVVRITT GSQTLDELLG GGIETLCITE AFGEFRSGKT QLAHTLCVST QLPLHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFRLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDPKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA VFQITTGGLM DVKD
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD
Arabidopsis Description
DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.